Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1620 and Dsui_1621 are separated by 146 nucleotides Dsui_1621 and Dsui_1622 are separated by 10 nucleotides Dsui_1622 and Dsui_1623 are separated by 220 nucleotides Dsui_1623 and Dsui_1624 are separated by 152 nucleotides
Dsui_1620: Dsui_1620 - PAP2 (acid phosphatase) superfamily protein, at 1,702,647 to 1,703,414
_1620
Dsui_1621: Dsui_1621 - diacylglycerol kinase, at 1,703,561 to 1,703,932
_1621
Dsui_1622: Dsui_1622 - excinuclease ABC, A subunit, at 1,703,943 to 1,706,762
_1622
Dsui_1623: Dsui_1623 - tRNA-Thr, at 1,706,983 to 1,707,058
_1623
Dsui_1624: Dsui_1624 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 1,707,211 to 1,707,978
_1624
Position (kb)
1703
1704
1705
1706
1707 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1703.128 kb on - strand, within Dsui_1620 at 1703.177 kb on + strand, within Dsui_1620 at 1703.220 kb on + strand, within Dsui_1620 at 1703.226 kb on + strand, within Dsui_1620 at 1703.338 kb on + strand at 1703.362 kb on + strand at 1703.416 kb on - strand at 1703.634 kb on + strand, within Dsui_1621 at 1703.661 kb on - strand, within Dsui_1621 at 1703.851 kb on + strand at 1703.957 kb on - strand at 1703.992 kb on + strand at 1704.092 kb on + strand at 1704.092 kb on + strand at 1704.116 kb on + strand at 1704.121 kb on + strand at 1704.193 kb on - strand at 1704.242 kb on + strand, within Dsui_1622 at 1704.242 kb on + strand, within Dsui_1622 at 1704.299 kb on + strand, within Dsui_1622 at 1704.299 kb on + strand, within Dsui_1622 at 1704.313 kb on - strand, within Dsui_1622 at 1704.389 kb on + strand, within Dsui_1622 at 1704.392 kb on - strand, within Dsui_1622 at 1704.464 kb on - strand, within Dsui_1622 at 1704.651 kb on - strand, within Dsui_1622 at 1704.651 kb on - strand, within Dsui_1622 at 1704.656 kb on - strand, within Dsui_1622 at 1704.705 kb on - strand, within Dsui_1622 at 1704.717 kb on - strand, within Dsui_1622 at 1704.802 kb on + strand, within Dsui_1622 at 1704.802 kb on + strand at 1704.832 kb on - strand, within Dsui_1622 at 1704.993 kb on - strand, within Dsui_1622 at 1705.047 kb on - strand, within Dsui_1622 at 1705.073 kb on - strand, within Dsui_1622 at 1705.180 kb on + strand, within Dsui_1622 at 1705.254 kb on - strand, within Dsui_1622 at 1705.269 kb on - strand, within Dsui_1622 at 1705.341 kb on + strand, within Dsui_1622 at 1705.443 kb on - strand, within Dsui_1622 at 1705.575 kb on + strand, within Dsui_1622 at 1705.600 kb on - strand, within Dsui_1622 at 1705.728 kb on - strand, within Dsui_1622 at 1705.728 kb on - strand, within Dsui_1622 at 1705.842 kb on + strand at 1705.869 kb on - strand, within Dsui_1622 at 1705.916 kb on + strand, within Dsui_1622 at 1705.916 kb on + strand, within Dsui_1622 at 1705.932 kb on - strand, within Dsui_1622 at 1705.944 kb on - strand, within Dsui_1622 at 1706.002 kb on - strand, within Dsui_1622 at 1706.146 kb on - strand, within Dsui_1622 at 1706.148 kb on + strand, within Dsui_1622 at 1706.156 kb on - strand, within Dsui_1622 at 1706.167 kb on - strand, within Dsui_1622 at 1706.187 kb on - strand, within Dsui_1622 at 1706.255 kb on + strand, within Dsui_1622 at 1706.421 kb on - strand, within Dsui_1622 at 1706.473 kb on + strand, within Dsui_1622 at 1706.702 kb on + strand at 1706.731 kb on - strand at 1706.731 kb on - strand at 1706.731 kb on - strand at 1706.776 kb on - strand at 1706.776 kb on - strand at 1706.788 kb on - strand at 1706.809 kb on + strand at 1706.953 kb on + strand at 1707.077 kb on + strand at 1707.080 kb on + strand at 1707.088 kb on - strand at 1707.199 kb on + strand at 1707.207 kb on - strand at 1707.217 kb on + strand at 1707.321 kb on + strand, within Dsui_1624 at 1707.388 kb on - strand at 1707.394 kb on + strand, within Dsui_1624 at 1707.407 kb on - strand, within Dsui_1624 at 1707.498 kb on + strand, within Dsui_1624 at 1707.501 kb on - strand at 1707.530 kb on + strand, within Dsui_1624 at 1707.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,703,128 - Dsui_1620 0.63 -1.5 1,703,177 + Dsui_1620 0.69 -1.5 1,703,220 + Dsui_1620 0.75 -1.5 1,703,226 + Dsui_1620 0.75 -1.5 1,703,338 + -1.1 1,703,362 + +0.5 1,703,416 - -1.1 1,703,634 + Dsui_1621 0.20 -1.1 1,703,661 - Dsui_1621 0.27 +0.3 1,703,851 + +0.5 1,703,957 - -2.6 1,703,992 + -1.1 1,704,092 + -0.5 1,704,092 + -1.1 1,704,116 + +0.5 1,704,121 + -0.5 1,704,193 - -5.1 1,704,242 + Dsui_1622 0.11 -2.1 1,704,242 + Dsui_1622 0.11 -0.5 1,704,299 + Dsui_1622 0.13 -0.5 1,704,299 + Dsui_1622 0.13 -0.5 1,704,313 - Dsui_1622 0.13 -5.3 1,704,389 + Dsui_1622 0.16 -0.5 1,704,392 - Dsui_1622 0.16 -5.7 1,704,464 - Dsui_1622 0.18 -6.4 1,704,651 - Dsui_1622 0.25 -4.0 1,704,651 - Dsui_1622 0.25 -5.9 1,704,656 - Dsui_1622 0.25 -5.6 1,704,705 - Dsui_1622 0.27 -3.3 1,704,717 - Dsui_1622 0.27 -5.8 1,704,802 + Dsui_1622 0.30 -1.1 1,704,802 + +0.5 1,704,832 - Dsui_1622 0.32 -7.2 1,704,993 - Dsui_1622 0.37 -4.6 1,705,047 - Dsui_1622 0.39 -6.3 1,705,073 - Dsui_1622 0.40 -6.2 1,705,180 + Dsui_1622 0.44 +0.5 1,705,254 - Dsui_1622 0.46 -4.1 1,705,269 - Dsui_1622 0.47 -6.0 1,705,341 + Dsui_1622 0.50 -0.5 1,705,443 - Dsui_1622 0.53 -6.5 1,705,575 + Dsui_1622 0.58 -1.8 1,705,600 - Dsui_1622 0.59 -2.3 1,705,728 - Dsui_1622 0.63 -5.0 1,705,728 - Dsui_1622 0.63 -6.3 1,705,842 + -0.5 1,705,869 - Dsui_1622 0.68 -2.5 1,705,916 + Dsui_1622 0.70 +0.5 1,705,916 + Dsui_1622 0.70 -1.1 1,705,932 - Dsui_1622 0.71 -6.0 1,705,944 - Dsui_1622 0.71 -2.4 1,706,002 - Dsui_1622 0.73 -5.5 1,706,146 - Dsui_1622 0.78 -4.3 1,706,148 + Dsui_1622 0.78 -0.5 1,706,156 - Dsui_1622 0.78 -5.9 1,706,167 - Dsui_1622 0.79 -4.8 1,706,187 - Dsui_1622 0.80 -4.5 1,706,255 + Dsui_1622 0.82 -1.8 1,706,421 - Dsui_1622 0.88 -6.3 1,706,473 + Dsui_1622 0.90 -1.5 1,706,702 + +0.5 1,706,731 - -4.5 1,706,731 - -5.2 1,706,731 - -2.3 1,706,776 - -1.8 1,706,776 - -3.7 1,706,788 - -3.9 1,706,809 + +0.5 1,706,953 + -0.1 1,707,077 + -0.4 1,707,080 + +0.7 1,707,088 - +0.5 1,707,199 + -0.4 1,707,207 - +0.5 1,707,217 + -0.5 1,707,321 + Dsui_1624 0.14 -2.1 1,707,388 - +0.5 1,707,394 + Dsui_1624 0.24 -1.1 1,707,407 - Dsui_1624 0.26 -1.1 1,707,498 + Dsui_1624 0.37 +0.1 1,707,501 - +0.5 1,707,530 + Dsui_1624 0.42 +0.0 1,707,571 - +0.5
Or see this region's nucleotide sequence