Strain Fitness in Dechlorosoma suillum PS around Dsui_1621

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1619 and Dsui_1620 are separated by 2 nucleotidesDsui_1620 and Dsui_1621 are separated by 146 nucleotidesDsui_1621 and Dsui_1622 are separated by 10 nucleotides Dsui_1619: Dsui_1619 - putative membrane-associated, metal-dependent hydrolase, at 1,700,893 to 1,702,644 _1619 Dsui_1620: Dsui_1620 - PAP2 (acid phosphatase) superfamily protein, at 1,702,647 to 1,703,414 _1620 Dsui_1621: Dsui_1621 - diacylglycerol kinase, at 1,703,561 to 1,703,932 _1621 Dsui_1622: Dsui_1622 - excinuclease ABC, A subunit, at 1,703,943 to 1,706,762 _1622 Position (kb) 1703 1704Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1702.625 kb on - strandat 1702.793 kb on + strandat 1703.128 kb on - strand, within Dsui_1620at 1703.177 kb on + strand, within Dsui_1620at 1703.220 kb on + strand, within Dsui_1620at 1703.226 kb on + strand, within Dsui_1620at 1703.338 kb on + strandat 1703.362 kb on + strandat 1703.416 kb on - strandat 1703.634 kb on + strand, within Dsui_1621at 1703.661 kb on - strand, within Dsui_1621at 1703.851 kb on + strandat 1703.957 kb on - strandat 1703.992 kb on + strandat 1704.092 kb on + strandat 1704.092 kb on + strandat 1704.116 kb on + strandat 1704.121 kb on + strandat 1704.193 kb on - strandat 1704.242 kb on + strand, within Dsui_1622at 1704.242 kb on + strand, within Dsui_1622at 1704.299 kb on + strand, within Dsui_1622at 1704.299 kb on + strand, within Dsui_1622at 1704.313 kb on - strand, within Dsui_1622at 1704.389 kb on + strand, within Dsui_1622at 1704.392 kb on - strand, within Dsui_1622at 1704.464 kb on - strand, within Dsui_1622at 1704.651 kb on - strand, within Dsui_1622at 1704.651 kb on - strand, within Dsui_1622at 1704.656 kb on - strand, within Dsui_1622at 1704.705 kb on - strand, within Dsui_1622at 1704.717 kb on - strand, within Dsui_1622at 1704.802 kb on + strand, within Dsui_1622at 1704.802 kb on + strandat 1704.832 kb on - strand, within Dsui_1622

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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1,702,625 - -0.5
1,702,793 + +0.5
1,703,128 - Dsui_1620 0.63 -1.5
1,703,177 + Dsui_1620 0.69 -1.5
1,703,220 + Dsui_1620 0.75 -1.5
1,703,226 + Dsui_1620 0.75 -1.5
1,703,338 + -1.1
1,703,362 + +0.5
1,703,416 - -1.1
1,703,634 + Dsui_1621 0.20 -1.1
1,703,661 - Dsui_1621 0.27 +0.3
1,703,851 + +0.5
1,703,957 - -2.6
1,703,992 + -1.1
1,704,092 + -0.5
1,704,092 + -1.1
1,704,116 + +0.5
1,704,121 + -0.5
1,704,193 - -5.1
1,704,242 + Dsui_1622 0.11 -2.1
1,704,242 + Dsui_1622 0.11 -0.5
1,704,299 + Dsui_1622 0.13 -0.5
1,704,299 + Dsui_1622 0.13 -0.5
1,704,313 - Dsui_1622 0.13 -5.3
1,704,389 + Dsui_1622 0.16 -0.5
1,704,392 - Dsui_1622 0.16 -5.7
1,704,464 - Dsui_1622 0.18 -6.4
1,704,651 - Dsui_1622 0.25 -4.0
1,704,651 - Dsui_1622 0.25 -5.9
1,704,656 - Dsui_1622 0.25 -5.6
1,704,705 - Dsui_1622 0.27 -3.3
1,704,717 - Dsui_1622 0.27 -5.8
1,704,802 + Dsui_1622 0.30 -1.1
1,704,802 + +0.5
1,704,832 - Dsui_1622 0.32 -7.2

Or see this region's nucleotide sequence