Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1461 and Dsui_1462 overlap by 4 nucleotides Dsui_1462 and Dsui_1463 are separated by 107 nucleotides
Dsui_1461: Dsui_1461 - RND family efflux transporter, MFP subunit, at 1,520,429 to 1,521,598
_1461
Dsui_1462: Dsui_1462 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,521,595 to 1,522,398
_1462
Dsui_1463: Dsui_1463 - transcriptional activator of acetoin/glycerol metabolism, at 1,522,506 to 1,524,446
_1463
Position (kb)
1521
1522
1523 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1520.622 kb on + strand, within Dsui_1461 at 1520.627 kb on + strand, within Dsui_1461 at 1520.628 kb on - strand, within Dsui_1461 at 1520.630 kb on - strand, within Dsui_1461 at 1520.635 kb on - strand at 1520.714 kb on - strand at 1520.779 kb on + strand, within Dsui_1461 at 1520.787 kb on - strand, within Dsui_1461 at 1520.851 kb on + strand, within Dsui_1461 at 1520.951 kb on + strand, within Dsui_1461 at 1520.995 kb on - strand, within Dsui_1461 at 1521.016 kb on - strand, within Dsui_1461 at 1521.036 kb on - strand at 1521.128 kb on - strand, within Dsui_1461 at 1521.145 kb on - strand, within Dsui_1461 at 1521.147 kb on + strand, within Dsui_1461 at 1521.163 kb on + strand, within Dsui_1461 at 1521.170 kb on - strand, within Dsui_1461 at 1521.272 kb on + strand, within Dsui_1461 at 1521.360 kb on - strand, within Dsui_1461 at 1521.396 kb on + strand, within Dsui_1461 at 1521.577 kb on + strand at 1521.869 kb on + strand, within Dsui_1462 at 1522.292 kb on - strand, within Dsui_1462 at 1522.530 kb on + strand at 1522.558 kb on - strand at 1522.671 kb on - strand at 1522.845 kb on - strand at 1522.871 kb on + strand, within Dsui_1463 at 1522.880 kb on - strand, within Dsui_1463 at 1522.995 kb on - strand, within Dsui_1463 at 1523.035 kb on + strand, within Dsui_1463 at 1523.241 kb on + strand at 1523.348 kb on - strand, within Dsui_1463 at 1523.360 kb on + strand, within Dsui_1463 at 1523.379 kb on - strand, within Dsui_1463
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,520,622 + Dsui_1461 0.16 -1.1 1,520,627 + Dsui_1461 0.17 -0.4 1,520,628 - Dsui_1461 0.17 -1.4 1,520,630 - Dsui_1461 0.17 -2.4 1,520,635 - +0.6 1,520,714 - -0.4 1,520,779 + Dsui_1461 0.30 -0.0 1,520,787 - Dsui_1461 0.31 -3.2 1,520,851 + Dsui_1461 0.36 -1.0 1,520,951 + Dsui_1461 0.45 -2.0 1,520,995 - Dsui_1461 0.48 +0.6 1,521,016 - Dsui_1461 0.50 -1.7 1,521,036 - +0.6 1,521,128 - Dsui_1461 0.60 -1.0 1,521,145 - Dsui_1461 0.61 -1.4 1,521,147 + Dsui_1461 0.61 -1.2 1,521,163 + Dsui_1461 0.63 -0.1 1,521,170 - Dsui_1461 0.63 -0.4 1,521,272 + Dsui_1461 0.72 -0.7 1,521,360 - Dsui_1461 0.80 +0.6 1,521,396 + Dsui_1461 0.83 -0.8 1,521,577 + -0.1 1,521,869 + Dsui_1462 0.34 -1.5 1,522,292 - Dsui_1462 0.87 -0.4 1,522,530 + +0.6 1,522,558 - -1.0 1,522,671 - -2.4 1,522,845 - +0.6 1,522,871 + Dsui_1463 0.19 -0.4 1,522,880 - Dsui_1463 0.19 -0.4 1,522,995 - Dsui_1463 0.25 -1.0 1,523,035 + Dsui_1463 0.27 -1.0 1,523,241 + -0.4 1,523,348 - Dsui_1463 0.43 -1.4 1,523,360 + Dsui_1463 0.44 -0.4 1,523,379 - Dsui_1463 0.45 -1.0
Or see this region's nucleotide sequence