Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1459 and Dsui_1460 are separated by 140 nucleotides Dsui_1460 and Dsui_1461 are separated by 219 nucleotides
Dsui_1459: Dsui_1459 - hypothetical protein, at 1,517,853 to 1,519,376
_1459
Dsui_1460: Dsui_1460 - cAMP-binding protein, at 1,519,517 to 1,520,209
_1460
Dsui_1461: Dsui_1461 - RND family efflux transporter, MFP subunit, at 1,520,429 to 1,521,598
_1461
Position (kb)
1519
1520
1521 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1518.560 kb on - strand, within Dsui_1459 at 1518.651 kb on + strand, within Dsui_1459 at 1518.689 kb on - strand, within Dsui_1459 at 1518.769 kb on + strand, within Dsui_1459 at 1518.777 kb on - strand, within Dsui_1459 at 1518.833 kb on + strand, within Dsui_1459 at 1518.953 kb on + strand, within Dsui_1459 at 1518.954 kb on + strand at 1519.019 kb on - strand, within Dsui_1459 at 1519.119 kb on - strand, within Dsui_1459 at 1519.219 kb on + strand, within Dsui_1459 at 1519.227 kb on - strand at 1519.238 kb on + strand at 1519.244 kb on + strand at 1519.375 kb on + strand at 1519.515 kb on + strand at 1519.530 kb on - strand at 1519.636 kb on + strand, within Dsui_1460 at 1519.679 kb on - strand, within Dsui_1460 at 1519.764 kb on + strand at 1519.770 kb on - strand, within Dsui_1460 at 1519.770 kb on - strand, within Dsui_1460 at 1519.800 kb on - strand, within Dsui_1460 at 1519.869 kb on + strand, within Dsui_1460 at 1519.888 kb on - strand, within Dsui_1460 at 1519.903 kb on + strand, within Dsui_1460 at 1519.907 kb on - strand, within Dsui_1460 at 1519.920 kb on + strand, within Dsui_1460 at 1519.926 kb on + strand at 1519.928 kb on - strand, within Dsui_1460 at 1519.940 kb on + strand at 1519.948 kb on - strand, within Dsui_1460 at 1519.948 kb on - strand, within Dsui_1460 at 1519.959 kb on + strand, within Dsui_1460 at 1519.963 kb on + strand at 1519.966 kb on - strand, within Dsui_1460 at 1519.966 kb on - strand, within Dsui_1460 at 1519.966 kb on - strand, within Dsui_1460 at 1519.967 kb on - strand, within Dsui_1460 at 1519.997 kb on + strand, within Dsui_1460 at 1520.005 kb on - strand, within Dsui_1460 at 1520.027 kb on - strand, within Dsui_1460 at 1520.044 kb on + strand, within Dsui_1460 at 1520.252 kb on + strand at 1520.258 kb on - strand at 1520.258 kb on - strand at 1520.273 kb on + strand at 1520.363 kb on - strand at 1520.426 kb on + strand at 1520.439 kb on - strand at 1520.439 kb on - strand at 1520.622 kb on + strand, within Dsui_1461 at 1520.627 kb on + strand, within Dsui_1461 at 1520.628 kb on - strand, within Dsui_1461 at 1520.630 kb on - strand, within Dsui_1461 at 1520.635 kb on - strand at 1520.714 kb on - strand at 1520.779 kb on + strand, within Dsui_1461 at 1520.787 kb on - strand, within Dsui_1461 at 1520.851 kb on + strand, within Dsui_1461 at 1520.951 kb on + strand, within Dsui_1461 at 1520.995 kb on - strand, within Dsui_1461 at 1521.016 kb on - strand, within Dsui_1461 at 1521.036 kb on - strand at 1521.128 kb on - strand, within Dsui_1461 at 1521.145 kb on - strand, within Dsui_1461 at 1521.147 kb on + strand, within Dsui_1461 at 1521.163 kb on + strand, within Dsui_1461 at 1521.170 kb on - strand, within Dsui_1461
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,518,560 - Dsui_1459 0.46 -0.6 1,518,651 + Dsui_1459 0.52 +0.6 1,518,689 - Dsui_1459 0.55 -1.4 1,518,769 + Dsui_1459 0.60 -0.4 1,518,777 - Dsui_1459 0.61 +0.5 1,518,833 + Dsui_1459 0.64 -0.4 1,518,953 + Dsui_1459 0.72 +0.6 1,518,954 + +0.6 1,519,019 - Dsui_1459 0.77 +1.0 1,519,119 - Dsui_1459 0.83 +1.2 1,519,219 + Dsui_1459 0.90 -1.4 1,519,227 - -0.6 1,519,238 + -1.9 1,519,244 + +0.6 1,519,375 + -2.0 1,519,515 + -2.0 1,519,530 - +0.3 1,519,636 + Dsui_1460 0.17 -2.6 1,519,679 - Dsui_1460 0.23 -2.6 1,519,764 + +0.6 1,519,770 - Dsui_1460 0.37 -0.2 1,519,770 - Dsui_1460 0.37 +0.0 1,519,800 - Dsui_1460 0.41 +0.0 1,519,869 + Dsui_1460 0.51 -1.0 1,519,888 - Dsui_1460 0.54 -0.1 1,519,903 + Dsui_1460 0.56 -2.6 1,519,907 - Dsui_1460 0.56 -0.0 1,519,920 + Dsui_1460 0.58 -1.4 1,519,926 + +0.6 1,519,928 - Dsui_1460 0.59 +0.9 1,519,940 + +0.6 1,519,948 - Dsui_1460 0.62 +0.6 1,519,948 - Dsui_1460 0.62 +0.3 1,519,959 + Dsui_1460 0.64 +0.6 1,519,963 + +0.6 1,519,966 - Dsui_1460 0.65 +0.1 1,519,966 - Dsui_1460 0.65 -0.3 1,519,966 - Dsui_1460 0.65 +1.2 1,519,967 - Dsui_1460 0.65 -0.2 1,519,997 + Dsui_1460 0.69 +0.6 1,520,005 - Dsui_1460 0.70 +0.6 1,520,027 - Dsui_1460 0.74 +0.7 1,520,044 + Dsui_1460 0.76 -1.4 1,520,252 + +0.6 1,520,258 - +0.6 1,520,258 - +0.6 1,520,273 + -2.0 1,520,363 - +0.6 1,520,426 + +0.9 1,520,439 - +0.6 1,520,439 - +0.6 1,520,622 + Dsui_1461 0.16 -1.1 1,520,627 + Dsui_1461 0.17 -0.4 1,520,628 - Dsui_1461 0.17 -1.4 1,520,630 - Dsui_1461 0.17 -2.4 1,520,635 - +0.6 1,520,714 - -0.4 1,520,779 + Dsui_1461 0.30 -0.0 1,520,787 - Dsui_1461 0.31 -3.2 1,520,851 + Dsui_1461 0.36 -1.0 1,520,951 + Dsui_1461 0.45 -2.0 1,520,995 - Dsui_1461 0.48 +0.6 1,521,016 - Dsui_1461 0.50 -1.7 1,521,036 - +0.6 1,521,128 - Dsui_1461 0.60 -1.0 1,521,145 - Dsui_1461 0.61 -1.4 1,521,147 + Dsui_1461 0.61 -1.2 1,521,163 + Dsui_1461 0.63 -0.1 1,521,170 - Dsui_1461 0.63 -0.4
Or see this region's nucleotide sequence