Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1403 and Dsui_1404 are separated by 19 nucleotides Dsui_1404 and Dsui_1405 overlap by 4 nucleotides Dsui_1405 and Dsui_1406 are separated by 3 nucleotides Dsui_1406 and Dsui_1407 overlap by 8 nucleotides
Dsui_1403: Dsui_1403 - putative NTP binding protein (contains STAS domain), at 1,462,525 to 1,462,812
_1403
Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755
_1404
Dsui_1405: Dsui_1405 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 1,463,752 to 1,464,507
_1405
Dsui_1406: Dsui_1406 - putative transcriptional regulator, BolA superfamily, at 1,464,511 to 1,464,756
_1406
Dsui_1407: Dsui_1407 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,464,749 to 1,466,002
_1407
Position (kb)
1463
1464
1465 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1462.806 kb on + strand at 1462.807 kb on + strand at 1462.990 kb on + strand, within Dsui_1404 at 1463.451 kb on + strand, within Dsui_1404 at 1463.888 kb on + strand, within Dsui_1405 at 1463.942 kb on + strand, within Dsui_1405 at 1464.081 kb on - strand, within Dsui_1405 at 1464.153 kb on + strand, within Dsui_1405 at 1464.241 kb on - strand, within Dsui_1405 at 1464.305 kb on - strand, within Dsui_1405 at 1464.307 kb on + strand, within Dsui_1405 at 1464.329 kb on + strand, within Dsui_1405 at 1464.331 kb on - strand, within Dsui_1405 at 1464.374 kb on - strand at 1464.467 kb on + strand at 1464.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,462,806 + -2.0 1,462,807 + +0.4 1,462,990 + Dsui_1404 0.17 -0.1 1,463,451 + Dsui_1404 0.67 -4.9 1,463,888 + Dsui_1405 0.18 -0.4 1,463,942 + Dsui_1405 0.25 -0.4 1,464,081 - Dsui_1405 0.44 -1.5 1,464,153 + Dsui_1405 0.53 -0.3 1,464,241 - Dsui_1405 0.65 -0.5 1,464,305 - Dsui_1405 0.73 +0.5 1,464,307 + Dsui_1405 0.73 +0.7 1,464,329 + Dsui_1405 0.76 +0.5 1,464,331 - Dsui_1405 0.77 +0.5 1,464,374 - +0.5 1,464,467 + -0.7 1,464,467 + -4.1
Or see this region's nucleotide sequence