Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1373 and Dsui_1374 are separated by 218 nucleotides Dsui_1374 and Dsui_1375 are separated by 36 nucleotides Dsui_1375 and Dsui_1376 are separated by 131 nucleotides
Dsui_1373: Dsui_1373 - ATP-dependent helicase HrpA, at 1,427,026 to 1,430,988
_1373
Dsui_1374: Dsui_1374 - Protein of unknown function (DUF540), at 1,431,207 to 1,431,974
_1374
Dsui_1375: Dsui_1375 - putative nuleotide-utilizing enzyme, moeA, at 1,432,011 to 1,432,799
_1375
Dsui_1376: Dsui_1376 - phasin family protein, at 1,432,931 to 1,433,488
_1376
Position (kb)
1431
1432 Strain fitness (log2 ratio)
-2
-1
0
1 at 1430.221 kb on - strand, within Dsui_1373 at 1430.298 kb on - strand, within Dsui_1373 at 1430.300 kb on + strand, within Dsui_1373 at 1430.448 kb on + strand, within Dsui_1373 at 1430.526 kb on + strand, within Dsui_1373 at 1430.611 kb on + strand at 1430.631 kb on + strand at 1430.662 kb on + strand at 1430.679 kb on + strand at 1430.754 kb on + strand at 1430.808 kb on - strand at 1430.825 kb on + strand at 1430.981 kb on - strand at 1431.064 kb on + strand at 1431.072 kb on - strand at 1431.110 kb on + strand at 1431.151 kb on + strand at 1431.333 kb on - strand, within Dsui_1374 at 1431.405 kb on - strand, within Dsui_1374 at 1431.584 kb on - strand, within Dsui_1374 at 1431.623 kb on - strand, within Dsui_1374 at 1431.628 kb on - strand, within Dsui_1374 at 1431.652 kb on + strand, within Dsui_1374 at 1431.684 kb on + strand, within Dsui_1374 at 1431.725 kb on - strand, within Dsui_1374 at 1431.778 kb on - strand, within Dsui_1374 at 1431.798 kb on + strand, within Dsui_1374 at 1431.860 kb on + strand, within Dsui_1374 at 1431.955 kb on + strand at 1432.008 kb on + strand at 1432.015 kb on - strand at 1432.035 kb on + strand at 1432.148 kb on - strand at 1432.388 kb on - strand, within Dsui_1375 at 1432.424 kb on + strand, within Dsui_1375 at 1432.430 kb on - strand, within Dsui_1375 at 1432.448 kb on + strand, within Dsui_1375 at 1432.503 kb on - strand, within Dsui_1375 at 1432.517 kb on - strand, within Dsui_1375 at 1432.636 kb on + strand, within Dsui_1375 at 1432.823 kb on + strand at 1432.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,430,221 - Dsui_1373 0.81 -0.5 1,430,298 - Dsui_1373 0.83 -0.5 1,430,300 + Dsui_1373 0.83 +0.8 1,430,448 + Dsui_1373 0.86 -0.4 1,430,526 + Dsui_1373 0.88 -0.4 1,430,611 + -1.2 1,430,631 + -1.3 1,430,662 + +0.2 1,430,679 + -0.8 1,430,754 + +0.4 1,430,808 - -0.5 1,430,825 + -0.4 1,430,981 - +0.5 1,431,064 + +0.6 1,431,072 - -2.1 1,431,110 + -1.8 1,431,151 + -0.8 1,431,333 - Dsui_1374 0.16 -0.5 1,431,405 - Dsui_1374 0.26 +0.5 1,431,584 - Dsui_1374 0.49 -1.5 1,431,623 - Dsui_1374 0.54 -1.5 1,431,628 - Dsui_1374 0.55 +0.5 1,431,652 + Dsui_1374 0.58 -0.8 1,431,684 + Dsui_1374 0.62 +0.1 1,431,725 - Dsui_1374 0.67 -1.1 1,431,778 - Dsui_1374 0.74 +0.5 1,431,798 + Dsui_1374 0.77 -0.5 1,431,860 + Dsui_1374 0.85 -1.2 1,431,955 + +0.3 1,432,008 + -0.7 1,432,015 - +0.5 1,432,035 + -0.7 1,432,148 - -0.5 1,432,388 - Dsui_1375 0.48 -1.8 1,432,424 + Dsui_1375 0.52 -1.5 1,432,430 - Dsui_1375 0.53 -2.1 1,432,448 + Dsui_1375 0.55 -0.8 1,432,503 - Dsui_1375 0.62 -0.5 1,432,517 - Dsui_1375 0.64 -1.1 1,432,636 + Dsui_1375 0.79 +0.3 1,432,823 + -0.9 1,432,900 - +0.2
Or see this region's nucleotide sequence