Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1258 and Dsui_1259 are separated by 120 nucleotides Dsui_1259 and Dsui_1260 are separated by 71 nucleotides Dsui_1260 and Dsui_1261 are separated by 82 nucleotides
Dsui_1258: Dsui_1258 - transcriptional regulator, at 1,322,080 to 1,322,991
_1258
Dsui_1259: Dsui_1259 - Pirin-related protein, at 1,323,112 to 1,323,822
_1259
Dsui_1260: Dsui_1260 - multimeric flavodoxin WrbA, at 1,323,894 to 1,324,469
_1260
Dsui_1261: Dsui_1261 - response regulator containing a CheY-like receiver domain and a GGDEF domain, at 1,324,552 to 1,325,352
_1261
Position (kb)
1323
1324
1325 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1323.051 kb on + strand at 1323.127 kb on - strand at 1323.251 kb on + strand at 1323.251 kb on + strand at 1323.420 kb on + strand at 1323.516 kb on + strand at 1323.655 kb on - strand at 1323.816 kb on + strand at 1323.823 kb on + strand at 1323.833 kb on - strand at 1323.875 kb on - strand at 1323.887 kb on - strand at 1323.937 kb on + strand at 1324.201 kb on + strand, within Dsui_1260 at 1324.267 kb on + strand, within Dsui_1260 at 1324.275 kb on - strand at 1324.300 kb on - strand, within Dsui_1260 at 1324.311 kb on + strand, within Dsui_1260 at 1324.319 kb on - strand at 1324.349 kb on - strand, within Dsui_1260 at 1324.352 kb on + strand, within Dsui_1260 at 1324.435 kb on + strand at 1324.497 kb on - strand at 1324.509 kb on + strand at 1324.526 kb on - strand at 1324.548 kb on - strand at 1324.687 kb on + strand, within Dsui_1261 at 1324.696 kb on + strand, within Dsui_1261 at 1324.767 kb on + strand, within Dsui_1261 at 1324.767 kb on + strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.802 kb on - strand, within Dsui_1261 at 1324.926 kb on - strand at 1324.985 kb on + strand, within Dsui_1261 at 1324.993 kb on - strand, within Dsui_1261 at 1325.069 kb on + strand, within Dsui_1261 at 1325.098 kb on - strand, within Dsui_1261 at 1325.111 kb on + strand, within Dsui_1261 at 1325.134 kb on - strand at 1325.218 kb on + strand, within Dsui_1261 at 1325.316 kb on + strand at 1325.316 kb on + strand at 1325.359 kb on - strand at 1325.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,323,051 + -0.6 1,323,127 - -0.6 1,323,251 + -0.6 1,323,251 + +0.4 1,323,420 + +0.4 1,323,516 + +0.4 1,323,655 - +0.4 1,323,816 + -1.6 1,323,823 + -0.6 1,323,833 - -0.6 1,323,875 - -0.6 1,323,887 - -0.6 1,323,937 + +0.4 1,324,201 + Dsui_1260 0.53 -1.9 1,324,267 + Dsui_1260 0.65 +0.4 1,324,275 - +0.4 1,324,300 - Dsui_1260 0.70 -1.9 1,324,311 + Dsui_1260 0.72 +0.4 1,324,319 - +0.4 1,324,349 - Dsui_1260 0.79 +0.4 1,324,352 + Dsui_1260 0.80 -1.9 1,324,435 + -0.6 1,324,497 - -1.6 1,324,509 + -1.9 1,324,526 - +1.4 1,324,548 - -0.6 1,324,687 + Dsui_1261 0.17 -0.3 1,324,696 + Dsui_1261 0.18 -0.6 1,324,767 + Dsui_1261 0.27 +0.4 1,324,767 + Dsui_1261 0.27 -0.2 1,324,775 - Dsui_1261 0.28 -4.1 1,324,775 - Dsui_1261 0.28 -1.9 1,324,775 - Dsui_1261 0.28 -2.7 1,324,802 - Dsui_1261 0.31 +0.4 1,324,926 - +0.4 1,324,985 + Dsui_1261 0.54 -0.4 1,324,993 - Dsui_1261 0.55 -3.0 1,325,069 + Dsui_1261 0.65 +0.1 1,325,098 - Dsui_1261 0.68 -0.6 1,325,111 + Dsui_1261 0.70 -0.1 1,325,134 - +0.4 1,325,218 + Dsui_1261 0.83 -0.7 1,325,316 + -0.6 1,325,316 + +0.0 1,325,359 - +0.4 1,325,364 - -0.6
Or see this region's nucleotide sequence