Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1254 and Dsui_1255 are separated by 53 nucleotides Dsui_1255 and Dsui_1256 are separated by 4 nucleotides Dsui_1256 and Dsui_1257 are separated by 45 nucleotides Dsui_1257 and Dsui_1258 are separated by 38 nucleotides
Dsui_1254: Dsui_1254 - TonB-dependent copper receptor, at 1,315,724 to 1,317,742
_1254
Dsui_1255: Dsui_1255 - mannose-6-phosphate isomerase, at 1,317,796 to 1,318,281
_1255
Dsui_1256: Dsui_1256 - hypothetical protein, at 1,318,286 to 1,318,540
_1256
Dsui_1257: Dsui_1257 - DNA-directed DNA polymerase III PolC, at 1,318,586 to 1,322,041
_1257
Dsui_1258: Dsui_1258 - transcriptional regulator, at 1,322,080 to 1,322,991
_1258
Position (kb)
1318
1319
1320
1321
1322
1323 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1317.589 kb on - strand at 1317.589 kb on - strand at 1317.594 kb on - strand at 1317.599 kb on - strand at 1317.619 kb on + strand at 1317.627 kb on - strand at 1317.627 kb on - strand at 1317.645 kb on - strand at 1317.648 kb on + strand at 1317.763 kb on - strand at 1317.773 kb on - strand at 1317.823 kb on + strand at 1317.856 kb on - strand, within Dsui_1255 at 1317.916 kb on + strand, within Dsui_1255 at 1317.928 kb on + strand, within Dsui_1255 at 1317.936 kb on - strand, within Dsui_1255 at 1318.004 kb on - strand, within Dsui_1255 at 1318.025 kb on - strand, within Dsui_1255 at 1318.057 kb on + strand at 1318.083 kb on + strand, within Dsui_1255 at 1318.083 kb on - strand, within Dsui_1255 at 1318.125 kb on - strand, within Dsui_1255 at 1318.140 kb on - strand, within Dsui_1255 at 1318.151 kb on - strand, within Dsui_1255 at 1318.285 kb on - strand at 1318.315 kb on - strand, within Dsui_1256 at 1318.359 kb on - strand, within Dsui_1256 at 1318.488 kb on - strand, within Dsui_1256 at 1318.502 kb on - strand, within Dsui_1256 at 1318.549 kb on + strand at 1318.554 kb on + strand at 1318.557 kb on - strand at 1318.557 kb on - strand at 1322.188 kb on - strand, within Dsui_1258 at 1322.338 kb on + strand, within Dsui_1258 at 1322.387 kb on + strand, within Dsui_1258 at 1322.401 kb on - strand, within Dsui_1258 at 1322.413 kb on - strand, within Dsui_1258 at 1322.495 kb on - strand, within Dsui_1258 at 1322.495 kb on - strand, within Dsui_1258 at 1322.637 kb on - strand, within Dsui_1258 at 1322.663 kb on + strand at 1322.663 kb on + strand, within Dsui_1258 at 1322.671 kb on - strand, within Dsui_1258 at 1322.684 kb on - strand, within Dsui_1258 at 1322.702 kb on + strand, within Dsui_1258 at 1322.707 kb on - strand, within Dsui_1258 at 1322.717 kb on - strand, within Dsui_1258 at 1322.786 kb on + strand at 1322.847 kb on + strand at 1322.855 kb on - strand, within Dsui_1258 at 1322.865 kb on - strand, within Dsui_1258 at 1322.890 kb on - strand, within Dsui_1258
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,317,589 - +4.2 1,317,589 - -1.1 1,317,594 - +0.5 1,317,599 - -0.5 1,317,619 + -1.5 1,317,627 - +0.5 1,317,627 - +0.5 1,317,645 - -2.3 1,317,648 + -1.1 1,317,763 - -0.7 1,317,773 - +0.4 1,317,823 + -0.5 1,317,856 - Dsui_1255 0.12 -0.2 1,317,916 + Dsui_1255 0.25 -1.9 1,317,928 + Dsui_1255 0.27 -2.1 1,317,936 - Dsui_1255 0.29 -0.3 1,318,004 - Dsui_1255 0.43 -0.4 1,318,025 - Dsui_1255 0.47 -1.2 1,318,057 + +0.5 1,318,083 + Dsui_1255 0.59 -2.5 1,318,083 - Dsui_1255 0.59 -0.8 1,318,125 - Dsui_1255 0.68 -0.6 1,318,140 - Dsui_1255 0.71 -0.6 1,318,151 - Dsui_1255 0.73 -0.0 1,318,285 - -0.8 1,318,315 - Dsui_1256 0.11 -1.7 1,318,359 - Dsui_1256 0.29 -0.1 1,318,488 - Dsui_1256 0.79 -0.6 1,318,502 - Dsui_1256 0.85 -0.4 1,318,549 + -1.5 1,318,554 + -1.1 1,318,557 - +0.6 1,318,557 - +0.1 1,322,188 - Dsui_1258 0.12 -1.0 1,322,338 + Dsui_1258 0.28 +0.4 1,322,387 + Dsui_1258 0.34 -0.6 1,322,401 - Dsui_1258 0.35 -0.5 1,322,413 - Dsui_1258 0.37 -0.8 1,322,495 - Dsui_1258 0.46 -0.4 1,322,495 - Dsui_1258 0.46 -0.9 1,322,637 - Dsui_1258 0.61 +0.6 1,322,663 + +0.4 1,322,663 + Dsui_1258 0.64 -3.0 1,322,671 - Dsui_1258 0.65 -0.3 1,322,684 - Dsui_1258 0.66 -0.4 1,322,702 + Dsui_1258 0.68 +0.4 1,322,707 - Dsui_1258 0.69 -0.5 1,322,717 - Dsui_1258 0.70 -0.6 1,322,786 + +0.4 1,322,847 + +0.4 1,322,855 - Dsui_1258 0.85 -0.3 1,322,865 - Dsui_1258 0.86 -1.0 1,322,890 - Dsui_1258 0.89 -0.9
Or see this region's nucleotide sequence