Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1118 and Dsui_1119 are separated by 47 nucleotides Dsui_1119 and Dsui_1120 overlap by 4 nucleotides Dsui_1120 and Dsui_1121 are separated by 101 nucleotides
Dsui_1118: Dsui_1118 - putative permease, at 1,166,050 to 1,166,946
_1118
Dsui_1119: Dsui_1119 - glutathione peroxidase, at 1,166,994 to 1,167,482
_1119
Dsui_1120: Dsui_1120 - uncharacterized protein SCO1/SenC/PrrC, at 1,167,479 to 1,168,063
_1120
Dsui_1121: Dsui_1121 - alternative sigma factor RpoH, at 1,168,165 to 1,169,022
_1121
Position (kb)
1167
1168
1169 Strain fitness (log2 ratio)
-2
-1
0
1 at 1166.524 kb on + strand, within Dsui_1118 at 1166.532 kb on - strand, within Dsui_1118 at 1166.532 kb on - strand, within Dsui_1118 at 1166.532 kb on - strand, within Dsui_1118 at 1166.543 kb on + strand, within Dsui_1118 at 1166.832 kb on + strand, within Dsui_1118 at 1166.832 kb on + strand, within Dsui_1118 at 1166.840 kb on - strand, within Dsui_1118 at 1166.977 kb on + strand at 1167.168 kb on + strand, within Dsui_1119 at 1167.325 kb on + strand, within Dsui_1119 at 1167.327 kb on - strand, within Dsui_1119 at 1167.408 kb on - strand, within Dsui_1119 at 1167.493 kb on + strand at 1167.508 kb on + strand at 1167.731 kb on + strand, within Dsui_1120 at 1167.732 kb on + strand, within Dsui_1120 at 1167.795 kb on + strand, within Dsui_1120 at 1167.855 kb on - strand, within Dsui_1120 at 1167.931 kb on + strand, within Dsui_1120 at 1167.939 kb on - strand, within Dsui_1120 at 1168.010 kb on + strand at 1169.005 kb on + strand at 1169.013 kb on - strand at 1169.034 kb on + strand at 1169.055 kb on + strand at 1169.063 kb on - strand at 1169.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,166,524 + Dsui_1118 0.53 -0.2 1,166,532 - Dsui_1118 0.54 +0.4 1,166,532 - Dsui_1118 0.54 -2.1 1,166,532 - Dsui_1118 0.54 +0.4 1,166,543 + Dsui_1118 0.55 -0.5 1,166,832 + Dsui_1118 0.87 -0.3 1,166,832 + Dsui_1118 0.87 -0.6 1,166,840 - Dsui_1118 0.88 +0.4 1,166,977 + +0.5 1,167,168 + Dsui_1119 0.36 +0.3 1,167,325 + Dsui_1119 0.68 +0.2 1,167,327 - Dsui_1119 0.68 -0.6 1,167,408 - Dsui_1119 0.85 -0.6 1,167,493 + -0.1 1,167,508 + +0.4 1,167,731 + Dsui_1120 0.43 -0.5 1,167,732 + Dsui_1120 0.43 -0.8 1,167,795 + Dsui_1120 0.54 -2.4 1,167,855 - Dsui_1120 0.64 -0.1 1,167,931 + Dsui_1120 0.77 -0.6 1,167,939 - Dsui_1120 0.79 -1.1 1,168,010 + -0.1 1,169,005 + -2.1 1,169,013 - -0.5 1,169,034 + -0.6 1,169,055 + -2.7 1,169,063 - +0.4 1,169,063 - +0.1
Or see this region's nucleotide sequence