Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0976 and Dsui_0977 are separated by 85 nucleotides Dsui_0977 and Dsui_0978 are separated by 87 nucleotides Dsui_0978 and Dsui_0979 are separated by 116 nucleotides
Dsui_0976: Dsui_0976 - acetyl-CoA acetyltransferase, at 1,002,373 to 1,003,554
_0976
Dsui_0977: Dsui_0977 - acyl-CoA dehydrogenase, at 1,003,640 to 1,004,776
_0977
Dsui_0978: Dsui_0978 - 2-hydroxychromene-2-carboxylate isomerase, at 1,004,864 to 1,005,466
_0978
Dsui_0979: Dsui_0979 - TIGR00730 family protein, at 1,005,583 to 1,006,167
_0979
Position (kb)
1003
1004
1005 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1002.689 kb on + strand, within Dsui_0976 at 1002.884 kb on - strand, within Dsui_0976 at 1002.906 kb on - strand, within Dsui_0976 at 1002.943 kb on - strand, within Dsui_0976 at 1002.955 kb on + strand, within Dsui_0976 at 1003.072 kb on - strand, within Dsui_0976 at 1003.157 kb on - strand, within Dsui_0976 at 1003.171 kb on + strand, within Dsui_0976 at 1003.172 kb on - strand at 1003.244 kb on - strand, within Dsui_0976 at 1003.301 kb on + strand, within Dsui_0976 at 1003.466 kb on + strand at 1003.556 kb on - strand at 1003.556 kb on - strand at 1003.559 kb on + strand at 1003.559 kb on + strand at 1003.567 kb on - strand at 1003.748 kb on + strand at 1003.786 kb on + strand, within Dsui_0977 at 1003.856 kb on - strand, within Dsui_0977 at 1003.890 kb on + strand, within Dsui_0977 at 1003.933 kb on - strand, within Dsui_0977 at 1004.088 kb on + strand, within Dsui_0977 at 1004.154 kb on + strand, within Dsui_0977 at 1004.171 kb on + strand, within Dsui_0977 at 1004.189 kb on + strand, within Dsui_0977 at 1004.233 kb on + strand, within Dsui_0977 at 1004.562 kb on + strand, within Dsui_0977 at 1004.568 kb on + strand, within Dsui_0977 at 1004.641 kb on + strand, within Dsui_0977 at 1004.657 kb on + strand, within Dsui_0977 at 1004.762 kb on - strand at 1004.778 kb on - strand at 1004.829 kb on + strand at 1004.829 kb on + strand at 1004.996 kb on - strand, within Dsui_0978 at 1005.128 kb on - strand, within Dsui_0978 at 1005.178 kb on + strand, within Dsui_0978 at 1005.222 kb on - strand, within Dsui_0978 at 1005.414 kb on - strand at 1005.540 kb on + strand at 1005.670 kb on + strand, within Dsui_0979
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 1,002,689 + Dsui_0976 0.27 +0.5 1,002,884 - Dsui_0976 0.43 +0.5 1,002,906 - Dsui_0976 0.45 -0.5 1,002,943 - Dsui_0976 0.48 -1.5 1,002,955 + Dsui_0976 0.49 +0.5 1,003,072 - Dsui_0976 0.59 -0.5 1,003,157 - Dsui_0976 0.66 +0.5 1,003,171 + Dsui_0976 0.68 +0.5 1,003,172 - +0.5 1,003,244 - Dsui_0976 0.74 -2.0 1,003,301 + Dsui_0976 0.79 +0.2 1,003,466 + -1.0 1,003,556 - -0.5 1,003,556 - +0.5 1,003,559 + +0.2 1,003,559 + -1.0 1,003,567 - -1.5 1,003,748 + +0.5 1,003,786 + Dsui_0977 0.13 +0.5 1,003,856 - Dsui_0977 0.19 +0.5 1,003,890 + Dsui_0977 0.22 +0.5 1,003,933 - Dsui_0977 0.26 -1.0 1,004,088 + Dsui_0977 0.39 -1.5 1,004,154 + Dsui_0977 0.45 -0.5 1,004,171 + Dsui_0977 0.47 +0.1 1,004,189 + Dsui_0977 0.48 -1.5 1,004,233 + Dsui_0977 0.52 -0.5 1,004,562 + Dsui_0977 0.81 -2.6 1,004,568 + Dsui_0977 0.82 +2.1 1,004,641 + Dsui_0977 0.88 -0.5 1,004,657 + Dsui_0977 0.89 +2.6 1,004,762 - +0.5 1,004,778 - +0.5 1,004,829 + -1.1 1,004,829 + +2.1 1,004,996 - Dsui_0978 0.22 +0.5 1,005,128 - Dsui_0978 0.44 -0.5 1,005,178 + Dsui_0978 0.52 -2.0 1,005,222 - Dsui_0978 0.59 -2.0 1,005,414 - -0.5 1,005,540 + -1.4 1,005,670 + Dsui_0979 0.15 -0.7
Or see this region's nucleotide sequence