Strain Fitness in Dechlorosoma suillum PS around Dsui_0970

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0969 and Dsui_0970 are separated by 139 nucleotidesDsui_0970 and Dsui_0971 are separated by 73 nucleotides Dsui_0969: Dsui_0969 - putative AP superfamily protein, at 994,177 to 995,337 _0969 Dsui_0970: Dsui_0970 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 995,477 to 996,766 _0970 Dsui_0971: Dsui_0971 - poly(R)-hydroxyalkanoic acid synthase, class I, at 996,840 to 998,669 _0971 Position (kb) 995 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1at 994.575 kb on + strand, within Dsui_0969at 994.617 kb on + strand, within Dsui_0969at 994.674 kb on - strand, within Dsui_0969at 994.723 kb on + strand, within Dsui_0969at 994.731 kb on - strand, within Dsui_0969at 994.793 kb on + strand, within Dsui_0969at 994.831 kb on + strand, within Dsui_0969at 994.839 kb on - strand, within Dsui_0969at 994.875 kb on - strand, within Dsui_0969at 994.979 kb on + strand, within Dsui_0969at 994.999 kb on - strand, within Dsui_0969at 995.144 kb on + strand, within Dsui_0969at 995.152 kb on - strandat 995.245 kb on + strandat 995.263 kb on - strandat 995.299 kb on - strandat 995.475 kb on + strandat 995.613 kb on + strand, within Dsui_0970at 995.645 kb on + strand, within Dsui_0970at 995.689 kb on + strand, within Dsui_0970at 996.113 kb on + strand, within Dsui_0970at 996.135 kb on + strand, within Dsui_0970at 996.144 kb on - strand, within Dsui_0970at 996.230 kb on - strandat 996.247 kb on - strand, within Dsui_0970at 996.299 kb on - strand, within Dsui_0970at 996.307 kb on - strand, within Dsui_0970at 996.312 kb on - strand, within Dsui_0970at 996.321 kb on + strand, within Dsui_0970at 996.422 kb on + strand, within Dsui_0970at 996.576 kb on + strand, within Dsui_0970at 996.595 kb on - strand, within Dsui_0970at 996.727 kb on + strandat 997.319 kb on + strand, within Dsui_0971at 997.319 kb on + strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.327 kb on - strand, within Dsui_0971at 997.332 kb on - strand, within Dsui_0971at 997.344 kb on - strand, within Dsui_0971at 997.418 kb on + strand, within Dsui_0971at 997.452 kb on - strand, within Dsui_0971at 997.509 kb on - strand, within Dsui_0971at 997.570 kb on - strand, within Dsui_0971at 997.630 kb on + strand, within Dsui_0971at 997.643 kb on - strand, within Dsui_0971at 997.660 kb on - strand, within Dsui_0971

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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994,575 + Dsui_0969 0.34 -0.5
994,617 + Dsui_0969 0.38 +1.1
994,674 - Dsui_0969 0.43 -1.1
994,723 + Dsui_0969 0.47 -2.3
994,731 - Dsui_0969 0.48 -1.1
994,793 + Dsui_0969 0.53 -1.1
994,831 + Dsui_0969 0.56 -0.5
994,839 - Dsui_0969 0.57 -2.8
994,875 - Dsui_0969 0.60 -0.5
994,979 + Dsui_0969 0.69 +0.5
994,999 - Dsui_0969 0.71 -2.1
995,144 + Dsui_0969 0.83 -0.5
995,152 - +0.5
995,245 + +0.5
995,263 - -0.5
995,299 - -0.5
995,475 + -0.6
995,613 + Dsui_0970 0.11 -1.6
995,645 + Dsui_0970 0.13 +0.5
995,689 + Dsui_0970 0.16 +0.5
996,113 + Dsui_0970 0.49 -1.0
996,135 + Dsui_0970 0.51 -0.5
996,144 - Dsui_0970 0.52 +0.5
996,230 - +0.5
996,247 - Dsui_0970 0.60 -1.5
996,299 - Dsui_0970 0.64 -1.1
996,307 - Dsui_0970 0.64 +0.5
996,312 - Dsui_0970 0.65 -0.5
996,321 + Dsui_0970 0.65 -1.1
996,422 + Dsui_0970 0.73 -0.0
996,576 + Dsui_0970 0.85 +0.3
996,595 - Dsui_0970 0.87 -0.5
996,727 + -3.4
997,319 + Dsui_0971 0.26 +0.5
997,319 + Dsui_0971 0.26 +0.5
997,327 - Dsui_0971 0.27 +0.3
997,327 - Dsui_0971 0.27 -0.4
997,327 - Dsui_0971 0.27 -0.6
997,327 - Dsui_0971 0.27 +0.3
997,327 - Dsui_0971 0.27 -0.2
997,327 - Dsui_0971 0.27 +0.3
997,327 - Dsui_0971 0.27 -0.9
997,327 - Dsui_0971 0.27 -0.6
997,332 - Dsui_0971 0.27 +0.0
997,344 - Dsui_0971 0.28 -1.7
997,418 + Dsui_0971 0.32 -0.5
997,452 - Dsui_0971 0.33 -0.6
997,509 - Dsui_0971 0.37 -0.3
997,570 - Dsui_0971 0.40 -0.8
997,630 + Dsui_0971 0.43 -0.5
997,643 - Dsui_0971 0.44 +0.1
997,660 - Dsui_0971 0.45 -0.1

Or see this region's nucleotide sequence