Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0957 and Dsui_0958 are separated by 64 nucleotides Dsui_0958 and Dsui_0959 are separated by 212 nucleotides Dsui_0959 and Dsui_0960 are separated by 9 nucleotides Dsui_0960 and Dsui_0961 are separated by 96 nucleotides Dsui_0961 and Dsui_0962 are separated by 140 nucleotides
Dsui_0957: Dsui_0957 - nitrogenase molybdenum-iron protein beta chain, at 983,306 to 984,826
_0957
Dsui_0958: Dsui_0958 - ferredoxin, at 984,891 to 985,238
_0958
Dsui_0959: Dsui_0959 - hypothetical protein, at 985,451 to 985,690
_0959
Dsui_0960: Dsui_0960 - putative permease, at 985,700 to 986,755
_0960
Dsui_0961: Dsui_0961 - RNA polymerase sigma factor, SigZ family, at 986,852 to 987,415
_0961
Dsui_0962: Dsui_0962 - collagenase-like protease, at 987,556 to 988,569
_0962
Position (kb) 985
986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 984.731 kb on - strand at 984.738 kb on + strand at 984.738 kb on + strand at 984.857 kb on - strand at 984.913 kb on + strand at 984.931 kb on - strand, within Dsui_0958 at 984.967 kb on - strand, within Dsui_0958 at 985.068 kb on + strand, within Dsui_0958 at 985.073 kb on + strand, within Dsui_0958 at 985.327 kb on + strand at 985.487 kb on - strand, within Dsui_0959 at 985.739 kb on + strand at 985.844 kb on + strand at 985.844 kb on + strand, within Dsui_0960 at 985.849 kb on + strand, within Dsui_0960 at 985.856 kb on + strand, within Dsui_0960 at 985.869 kb on - strand, within Dsui_0960 at 985.932 kb on + strand, within Dsui_0960 at 986.099 kb on + strand at 986.165 kb on + strand, within Dsui_0960 at 986.190 kb on + strand, within Dsui_0960 at 986.237 kb on + strand, within Dsui_0960 at 986.271 kb on - strand, within Dsui_0960 at 986.294 kb on - strand, within Dsui_0960 at 986.438 kb on + strand, within Dsui_0960 at 986.593 kb on + strand, within Dsui_0960 at 986.611 kb on + strand, within Dsui_0960 at 986.852 kb on - strand at 986.927 kb on + strand at 986.975 kb on + strand, within Dsui_0961 at 986.996 kb on - strand, within Dsui_0961 at 987.008 kb on - strand, within Dsui_0961 at 987.216 kb on - strand, within Dsui_0961 at 987.228 kb on + strand at 987.316 kb on + strand, within Dsui_0961 at 987.324 kb on - strand, within Dsui_0961 at 987.436 kb on + strand at 987.480 kb on - strand at 987.524 kb on - strand at 987.524 kb on - strand at 987.599 kb on + strand at 987.721 kb on + strand, within Dsui_0962
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 984,731 - +0.5 984,738 + +0.5 984,738 + -1.8 984,857 - -3.1 984,913 + +0.5 984,931 - Dsui_0958 0.11 -1.8 984,967 - Dsui_0958 0.22 -1.8 985,068 + Dsui_0958 0.51 -1.1 985,073 + Dsui_0958 0.52 -1.5 985,327 + -0.5 985,487 - Dsui_0959 0.15 +0.5 985,739 + -1.5 985,844 + +0.5 985,844 + Dsui_0960 0.14 -0.5 985,849 + Dsui_0960 0.14 -1.5 985,856 + Dsui_0960 0.15 -0.5 985,869 - Dsui_0960 0.16 +0.5 985,932 + Dsui_0960 0.22 -1.1 986,099 + +0.5 986,165 + Dsui_0960 0.44 +0.5 986,190 + Dsui_0960 0.46 -1.1 986,237 + Dsui_0960 0.51 +0.5 986,271 - Dsui_0960 0.54 -1.1 986,294 - Dsui_0960 0.56 -2.5 986,438 + Dsui_0960 0.70 -1.1 986,593 + Dsui_0960 0.85 -0.5 986,611 + Dsui_0960 0.86 +0.5 986,852 - +0.5 986,927 + +0.5 986,975 + Dsui_0961 0.22 +0.5 986,996 - Dsui_0961 0.26 +0.5 987,008 - Dsui_0961 0.28 -1.3 987,216 - Dsui_0961 0.65 -0.5 987,228 + +0.5 987,316 + Dsui_0961 0.82 -0.5 987,324 - Dsui_0961 0.84 -2.1 987,436 + -1.8 987,480 - +0.5 987,524 - +0.5 987,524 - -0.5 987,599 + -2.9 987,721 + Dsui_0962 0.16 -0.5
Or see this region's nucleotide sequence