Strain Fitness in Dechlorosoma suillum PS around Dsui_0957

Experiment: ALP with Cisplatin 0.0009 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0956 and Dsui_0957 are separated by 132 nucleotidesDsui_0957 and Dsui_0958 are separated by 64 nucleotidesDsui_0958 and Dsui_0959 are separated by 212 nucleotidesDsui_0959 and Dsui_0960 are separated by 9 nucleotides Dsui_0956: Dsui_0956 - nitrogenase molybdenum-iron protein alpha chain, at 981,731 to 983,173 _0956 Dsui_0957: Dsui_0957 - nitrogenase molybdenum-iron protein beta chain, at 983,306 to 984,826 _0957 Dsui_0958: Dsui_0958 - ferredoxin, at 984,891 to 985,238 _0958 Dsui_0959: Dsui_0959 - hypothetical protein, at 985,451 to 985,690 _0959 Dsui_0960: Dsui_0960 - putative permease, at 985,700 to 986,755 _0960 Position (kb) 983 984 985Strain fitness (log2 ratio) -3 -2 -1 0 1at 982.351 kb on + strand, within Dsui_0956at 982.599 kb on + strand, within Dsui_0956at 982.613 kb on + strand, within Dsui_0956at 982.623 kb on + strand, within Dsui_0956at 982.896 kb on + strand, within Dsui_0956at 982.904 kb on - strand, within Dsui_0956at 983.099 kb on + strandat 983.159 kb on + strandat 983.177 kb on - strandat 983.205 kb on + strandat 983.231 kb on + strandat 983.239 kb on - strandat 983.273 kb on - strandat 983.530 kb on + strand, within Dsui_0957at 983.555 kb on + strand, within Dsui_0957at 983.574 kb on + strand, within Dsui_0957at 983.596 kb on + strand, within Dsui_0957at 983.740 kb on - strand, within Dsui_0957at 983.815 kb on - strand, within Dsui_0957at 983.846 kb on + strand, within Dsui_0957at 983.902 kb on + strand, within Dsui_0957at 984.026 kb on + strand, within Dsui_0957at 984.044 kb on - strand, within Dsui_0957at 984.178 kb on - strand, within Dsui_0957at 984.188 kb on + strand, within Dsui_0957at 984.369 kb on - strand, within Dsui_0957at 984.395 kb on - strandat 984.416 kb on + strand, within Dsui_0957at 984.446 kb on - strand, within Dsui_0957at 984.531 kb on - strandat 984.576 kb on - strand, within Dsui_0957at 984.579 kb on + strandat 984.731 kb on - strandat 984.738 kb on + strandat 984.738 kb on + strandat 984.857 kb on - strandat 984.913 kb on + strandat 984.931 kb on - strand, within Dsui_0958at 984.967 kb on - strand, within Dsui_0958at 985.068 kb on + strand, within Dsui_0958at 985.073 kb on + strand, within Dsui_0958at 985.327 kb on + strandat 985.487 kb on - strand, within Dsui_0959at 985.739 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
remove
982,351 + Dsui_0956 0.43 +0.5
982,599 + Dsui_0956 0.60 +0.5
982,613 + Dsui_0956 0.61 +0.5
982,623 + Dsui_0956 0.62 -0.5
982,896 + Dsui_0956 0.81 +0.5
982,904 - Dsui_0956 0.81 -0.5
983,099 + -0.5
983,159 + +0.5
983,177 - -1.5
983,205 + +0.5
983,231 + +0.5
983,239 - +0.5
983,273 - -1.1
983,530 + Dsui_0957 0.15 -0.5
983,555 + Dsui_0957 0.16 +0.5
983,574 + Dsui_0957 0.18 -0.5
983,596 + Dsui_0957 0.19 +0.5
983,740 - Dsui_0957 0.29 -0.5
983,815 - Dsui_0957 0.33 -0.5
983,846 + Dsui_0957 0.36 -0.5
983,902 + Dsui_0957 0.39 +0.5
984,026 + Dsui_0957 0.47 -0.5
984,044 - Dsui_0957 0.49 +0.5
984,178 - Dsui_0957 0.57 -2.5
984,188 + Dsui_0957 0.58 +0.5
984,369 - Dsui_0957 0.70 -1.1
984,395 - -0.5
984,416 + Dsui_0957 0.73 -1.1
984,446 - Dsui_0957 0.75 -2.3
984,531 - -0.5
984,576 - Dsui_0957 0.83 -0.7
984,579 + +0.5
984,731 - +0.5
984,738 + +0.5
984,738 + -1.8
984,857 - -3.1
984,913 + +0.5
984,931 - Dsui_0958 0.11 -1.8
984,967 - Dsui_0958 0.22 -1.8
985,068 + Dsui_0958 0.51 -1.1
985,073 + Dsui_0958 0.52 -1.5
985,327 + -0.5
985,487 - Dsui_0959 0.15 +0.5
985,739 + -1.5

Or see this region's nucleotide sequence