Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0926 and Dsui_0927 are separated by 3 nucleotides Dsui_0927 and Dsui_0928 are separated by 181 nucleotides Dsui_0928 and Dsui_0929 are separated by 20 nucleotides
Dsui_0926: Dsui_0926 - fumarate hydratase, class II, at 954,055 to 955,446
_0926
Dsui_0927: Dsui_0927 - cytochrome c551/c552, at 955,450 to 955,836
_0927
Dsui_0928: Dsui_0928 - cytochrome c oxidase accessory protein FixG, at 956,018 to 957,433
_0928
Dsui_0929: Dsui_0929 - Zn-dependent hydrolase, glyoxylase, at 957,454 to 958,170
_0929
Position (kb) 956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 955.028 kb on + strand, within Dsui_0926 at 955.045 kb on + strand, within Dsui_0926 at 955.053 kb on - strand, within Dsui_0926 at 955.211 kb on + strand, within Dsui_0926 at 955.216 kb on - strand, within Dsui_0926 at 955.275 kb on + strand, within Dsui_0926 at 955.323 kb on + strand at 955.385 kb on - strand at 955.410 kb on + strand at 955.416 kb on + strand at 955.418 kb on - strand at 955.575 kb on - strand, within Dsui_0927 at 955.576 kb on - strand, within Dsui_0927 at 955.677 kb on + strand, within Dsui_0927 at 955.685 kb on - strand, within Dsui_0927 at 955.799 kb on + strand at 955.812 kb on - strand at 955.822 kb on - strand at 955.921 kb on + strand at 955.975 kb on + strand at 955.988 kb on - strand at 956.006 kb on + strand at 956.006 kb on + strand at 956.014 kb on + strand at 956.105 kb on + strand at 956.202 kb on - strand, within Dsui_0928 at 956.217 kb on + strand, within Dsui_0928 at 956.274 kb on - strand, within Dsui_0928 at 956.295 kb on - strand, within Dsui_0928 at 956.301 kb on + strand, within Dsui_0928 at 956.346 kb on + strand, within Dsui_0928 at 956.376 kb on + strand, within Dsui_0928 at 956.388 kb on - strand, within Dsui_0928 at 956.403 kb on - strand, within Dsui_0928 at 956.500 kb on - strand, within Dsui_0928 at 956.670 kb on + strand at 956.692 kb on - strand, within Dsui_0928 at 956.719 kb on + strand, within Dsui_0928 at 956.817 kb on - strand, within Dsui_0928 at 956.847 kb on - strand, within Dsui_0928 at 956.888 kb on - strand at 956.894 kb on + strand, within Dsui_0928 at 956.950 kb on + strand, within Dsui_0928 at 957.001 kb on - strand, within Dsui_0928 at 957.067 kb on + strand at 957.100 kb on - strand, within Dsui_0928 at 957.172 kb on + strand, within Dsui_0928 at 957.204 kb on - strand, within Dsui_0928 at 957.210 kb on + strand, within Dsui_0928 at 957.231 kb on + strand, within Dsui_0928 at 957.236 kb on + strand, within Dsui_0928 at 957.330 kb on + strand at 957.335 kb on + strand at 957.343 kb on - strand at 957.368 kb on - strand at 957.373 kb on + strand at 957.420 kb on - strand at 957.420 kb on - strand at 957.420 kb on - strand at 957.421 kb on + strand at 957.429 kb on + strand at 957.458 kb on - strand at 957.489 kb on + strand at 957.497 kb on - strand at 957.497 kb on - strand at 957.522 kb on - strand at 957.559 kb on + strand, within Dsui_0929 at 957.559 kb on + strand, within Dsui_0929 at 957.595 kb on + strand, within Dsui_0929 at 957.603 kb on - strand, within Dsui_0929 at 957.712 kb on + strand, within Dsui_0929 at 957.749 kb on - strand, within Dsui_0929 at 957.792 kb on - strand, within Dsui_0929 at 957.805 kb on + strand, within Dsui_0929 at 957.805 kb on + strand, within Dsui_0929 at 957.831 kb on + strand at 957.957 kb on + strand, within Dsui_0929 at 957.963 kb on + strand, within Dsui_0929 at 957.963 kb on + strand, within Dsui_0929 at 957.974 kb on + strand, within Dsui_0929 at 957.991 kb on + strand, within Dsui_0929 at 958.078 kb on - strand at 958.123 kb on + strand at 958.206 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 955,028 + Dsui_0926 0.70 -2.1 955,045 + Dsui_0926 0.71 +0.5 955,053 - Dsui_0926 0.72 -2.1 955,211 + Dsui_0926 0.83 -0.6 955,216 - Dsui_0926 0.83 -1.5 955,275 + Dsui_0926 0.88 -2.3 955,323 + -0.8 955,385 - -1.0 955,410 + +0.5 955,416 + +0.6 955,418 - -0.5 955,575 - Dsui_0927 0.32 +0.5 955,576 - Dsui_0927 0.33 +2.0 955,677 + Dsui_0927 0.59 -2.9 955,685 - Dsui_0927 0.61 +0.9 955,799 + -0.3 955,812 - +0.0 955,822 - +2.7 955,921 + +0.5 955,975 + +0.5 955,988 - -0.5 956,006 + +0.5 956,006 + -1.1 956,014 + -2.1 956,105 + +0.5 956,202 - Dsui_0928 0.13 -2.1 956,217 + Dsui_0928 0.14 +0.5 956,274 - Dsui_0928 0.18 +0.5 956,295 - Dsui_0928 0.20 -1.1 956,301 + Dsui_0928 0.20 -3.3 956,346 + Dsui_0928 0.23 -1.1 956,376 + Dsui_0928 0.25 -0.5 956,388 - Dsui_0928 0.26 +0.5 956,403 - Dsui_0928 0.27 +0.5 956,500 - Dsui_0928 0.34 +0.5 956,670 + +0.5 956,692 - Dsui_0928 0.48 -0.5 956,719 + Dsui_0928 0.50 -0.5 956,817 - Dsui_0928 0.56 -2.3 956,847 - Dsui_0928 0.59 -2.8 956,888 - +0.5 956,894 + Dsui_0928 0.62 +0.5 956,950 + Dsui_0928 0.66 +0.5 957,001 - Dsui_0928 0.69 -2.1 957,067 + +0.5 957,100 - Dsui_0928 0.76 -0.5 957,172 + Dsui_0928 0.81 +0.5 957,204 - Dsui_0928 0.84 +0.5 957,210 + Dsui_0928 0.84 -2.6 957,231 + Dsui_0928 0.86 +0.5 957,236 + Dsui_0928 0.86 -0.5 957,330 + +0.5 957,335 + -1.1 957,343 - +0.5 957,368 - -0.5 957,373 + -2.6 957,420 - +0.5 957,420 - +0.5 957,420 - -1.8 957,421 + +0.5 957,429 + -1.6 957,458 - -1.1 957,489 + -1.8 957,497 - -1.5 957,497 - +0.5 957,522 - +0.5 957,559 + Dsui_0929 0.15 -1.1 957,559 + Dsui_0929 0.15 -1.1 957,595 + Dsui_0929 0.20 -0.5 957,603 - Dsui_0929 0.21 -1.1 957,712 + Dsui_0929 0.36 -0.5 957,749 - Dsui_0929 0.41 -0.5 957,792 - Dsui_0929 0.47 +0.5 957,805 + Dsui_0929 0.49 -1.1 957,805 + Dsui_0929 0.49 -0.5 957,831 + +0.5 957,957 + Dsui_0929 0.70 -1.8 957,963 + Dsui_0929 0.71 -0.5 957,963 + Dsui_0929 0.71 -1.5 957,974 + Dsui_0929 0.73 -1.5 957,991 + Dsui_0929 0.75 -0.5 958,078 - +0.5 958,123 + -0.5 958,206 + -3.1
Or see this region's nucleotide sequence