Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0847 and Dsui_0848 are separated by 4 nucleotides Dsui_0848 and Dsui_0849 overlap by 4 nucleotides Dsui_0849 and Dsui_0850 are separated by 274 nucleotides Dsui_0850 and Dsui_0851 are separated by 73 nucleotides
Dsui_0847: Dsui_0847 - 16S rRNA (guanine(527)-N(7))-methyltransferase GidB, at 865,139 to 865,780
_0847
Dsui_0848: Dsui_0848 - ATPase involved in chromosome partitioning, at 865,785 to 866,567
_0848
Dsui_0849: Dsui_0849 - ParB-like partition protein, at 866,564 to 867,397
_0849
Dsui_0850: Dsui_0850 - hypothetical protein, at 867,672 to 867,947
_0850
Dsui_0851: Dsui_0851 - F0F1-type ATP synthase, alpha subunit, at 868,021 to 868,896
_0851
Position (kb) 866
867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 865.565 kb on + strand, within Dsui_0847 at 865.608 kb on + strand, within Dsui_0847 at 865.608 kb on + strand, within Dsui_0847 at 865.712 kb on + strand, within Dsui_0847 at 865.712 kb on + strand, within Dsui_0847 at 865.775 kb on + strand at 865.790 kb on + strand at 867.531 kb on + strand at 867.539 kb on - strand at 867.548 kb on + strand at 867.641 kb on + strand at 867.644 kb on + strand at 867.716 kb on + strand, within Dsui_0850 at 867.721 kb on + strand, within Dsui_0850 at 867.721 kb on + strand, within Dsui_0850 at 867.726 kb on + strand, within Dsui_0850 at 867.773 kb on + strand, within Dsui_0850 at 867.776 kb on + strand, within Dsui_0850 at 867.884 kb on + strand, within Dsui_0850 at 867.929 kb on + strand at 867.929 kb on + strand at 867.929 kb on + strand at 867.929 kb on + strand at 867.952 kb on + strand at 867.967 kb on + strand at 867.967 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 865,565 + Dsui_0847 0.66 -0.2 865,608 + Dsui_0847 0.73 +1.0 865,608 + Dsui_0847 0.73 +0.8 865,712 + Dsui_0847 0.89 +0.9 865,712 + Dsui_0847 0.89 +0.8 865,775 + -0.6 865,790 + -0.7 867,531 + +0.2 867,539 - -0.5 867,548 + +1.2 867,641 + -0.9 867,644 + -1.2 867,716 + Dsui_0850 0.16 -2.0 867,721 + Dsui_0850 0.18 -2.5 867,721 + Dsui_0850 0.18 -2.0 867,726 + Dsui_0850 0.20 -2.3 867,773 + Dsui_0850 0.37 -2.0 867,776 + Dsui_0850 0.38 -2.8 867,884 + Dsui_0850 0.77 -2.7 867,929 + -2.5 867,929 + -1.6 867,929 + -1.9 867,929 + -2.7 867,952 + -1.2 867,967 + -0.6 867,967 + -2.4
Or see this region's nucleotide sequence