Strain Fitness in Dechlorosoma suillum PS around Dsui_0816

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0814 and Dsui_0815 are separated by 90 nucleotidesDsui_0815 and Dsui_0816 are separated by 57 nucleotidesDsui_0816 and Dsui_0817 are separated by 55 nucleotidesDsui_0817 and Dsui_0818 are separated by 117 nucleotides Dsui_0814: Dsui_0814 - S1/P1 Nuclease, at 825,764 to 826,687 _0814 Dsui_0815: Dsui_0815 - Zn-dependent protease with chaperone function, at 826,778 to 827,623 _0815 Dsui_0816: Dsui_0816 - methionyl-tRNA formyltransferase, at 827,681 to 828,607 _0816 Dsui_0817: Dsui_0817 - peptide deformylase, at 828,663 to 829,166 _0817 Dsui_0818: Dsui_0818 - LysM domain-containing protein, at 829,284 to 830,339 _0818 Position (kb) 827 828 829Strain fitness (log2 ratio) -2 -1 0 1 2at 826.699 kb on + strandat 826.699 kb on + strandat 826.707 kb on - strandat 826.707 kb on - strandat 826.707 kb on - strandat 826.753 kb on - strandat 826.854 kb on + strandat 826.854 kb on + strandat 826.862 kb on - strandat 826.926 kb on + strand, within Dsui_0815at 826.928 kb on - strand, within Dsui_0815at 826.952 kb on - strand, within Dsui_0815at 826.952 kb on - strand, within Dsui_0815at 826.952 kb on - strand, within Dsui_0815at 826.957 kb on - strand, within Dsui_0815at 826.976 kb on - strand, within Dsui_0815at 826.980 kb on + strand, within Dsui_0815at 827.015 kb on - strand, within Dsui_0815at 827.135 kb on - strand, within Dsui_0815at 827.155 kb on - strand, within Dsui_0815at 827.232 kb on - strand, within Dsui_0815at 827.259 kb on - strand, within Dsui_0815at 827.308 kb on - strand, within Dsui_0815at 827.328 kb on + strand, within Dsui_0815at 827.352 kb on + strand, within Dsui_0815at 827.352 kb on + strand, within Dsui_0815at 827.363 kb on + strand, within Dsui_0815at 827.363 kb on + strand, within Dsui_0815at 827.409 kb on - strand, within Dsui_0815at 827.413 kb on - strand, within Dsui_0815at 827.419 kb on - strand, within Dsui_0815at 827.450 kb on + strand, within Dsui_0815at 827.461 kb on + strand, within Dsui_0815at 827.507 kb on + strand, within Dsui_0815at 827.508 kb on + strand, within Dsui_0815at 827.508 kb on + strand, within Dsui_0815at 827.531 kb on + strand, within Dsui_0815at 827.531 kb on + strand, within Dsui_0815at 827.561 kb on - strandat 827.596 kb on + strandat 827.620 kb on - strandat 827.623 kb on + strandat 827.623 kb on + strandat 827.630 kb on + strandat 827.631 kb on - strandat 827.709 kb on + strandat 827.709 kb on + strandat 827.717 kb on - strandat 828.639 kb on + strandat 828.639 kb on + strandat 828.639 kb on + strandat 828.639 kb on - strandat 828.639 kb on - strandat 828.639 kb on - strandat 828.644 kb on + strandat 828.644 kb on - strandat 828.647 kb on - strandat 828.647 kb on - strandat 828.652 kb on - strandat 829.151 kb on - strandat 829.155 kb on + strandat 829.163 kb on - strandat 829.189 kb on + strandat 829.225 kb on + strandat 829.225 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.232 kb on + strandat 829.235 kb on - strandat 829.240 kb on - strandat 829.240 kb on - strandat 829.240 kb on - strandat 829.240 kb on - strandat 829.240 kb on - strandat 829.266 kb on - strandat 829.266 kb on - strandat 829.266 kb on - strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.311 kb on + strandat 829.319 kb on - strandat 829.319 kb on - strandat 829.319 kb on - strandat 829.319 kb on - strandat 829.343 kb on + strandat 829.382 kb on - strandat 829.404 kb on - strand, within Dsui_0818at 829.438 kb on - strand, within Dsui_0818at 829.473 kb on + strand, within Dsui_0818at 829.473 kb on + strand, within Dsui_0818at 829.481 kb on - strand, within Dsui_0818at 829.481 kb on - strand, within Dsui_0818at 829.574 kb on + strand, within Dsui_0818

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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826,699 + +0.8
826,699 + -0.2
826,707 - +0.6
826,707 - -0.0
826,707 - -0.1
826,753 - -0.2
826,854 + -0.8
826,854 + +2.1
826,862 - -0.8
826,926 + Dsui_0815 0.17 -1.7
826,928 - Dsui_0815 0.18 +0.3
826,952 - Dsui_0815 0.21 -0.7
826,952 - Dsui_0815 0.21 -0.5
826,952 - Dsui_0815 0.21 -0.4
826,957 - Dsui_0815 0.21 -0.5
826,976 - Dsui_0815 0.23 -0.8
826,980 + Dsui_0815 0.24 -0.5
827,015 - Dsui_0815 0.28 -0.1
827,135 - Dsui_0815 0.42 -0.4
827,155 - Dsui_0815 0.45 -0.4
827,232 - Dsui_0815 0.54 +0.3
827,259 - Dsui_0815 0.57 -0.4
827,308 - Dsui_0815 0.63 -0.7
827,328 + Dsui_0815 0.65 -2.2
827,352 + Dsui_0815 0.68 -1.3
827,352 + Dsui_0815 0.68 +0.0
827,363 + Dsui_0815 0.69 -1.9
827,363 + Dsui_0815 0.69 -0.7
827,409 - Dsui_0815 0.75 -0.4
827,413 - Dsui_0815 0.75 -0.6
827,419 - Dsui_0815 0.76 -0.7
827,450 + Dsui_0815 0.79 -1.1
827,461 + Dsui_0815 0.81 +0.8
827,507 + Dsui_0815 0.86 +0.8
827,508 + Dsui_0815 0.86 -1.8
827,508 + Dsui_0815 0.86 -2.1
827,531 + Dsui_0815 0.89 +0.5
827,531 + Dsui_0815 0.89 -0.1
827,561 - -0.5
827,596 + -0.7
827,620 - -0.1
827,623 + -1.3
827,623 + +1.2
827,630 + -1.1
827,631 - -0.4
827,709 + +0.2
827,709 + -1.5
827,717 - +0.2
828,639 + +0.1
828,639 + -0.6
828,639 + -1.9
828,639 - -0.5
828,639 - -0.2
828,639 - +1.4
828,644 + -1.8
828,644 - +0.0
828,647 - +0.6
828,647 - +0.1
828,652 - +0.3
829,151 - -0.3
829,155 + -1.1
829,163 - -0.2
829,189 + -0.5
829,225 + +0.2
829,225 + -0.5
829,232 + -0.6
829,232 + -0.6
829,232 + -0.6
829,232 + -0.8
829,232 + +0.2
829,232 + -0.3
829,232 + -0.6
829,232 + +0.2
829,235 - -0.3
829,240 - -0.4
829,240 - -0.3
829,240 - -1.0
829,240 - +0.6
829,240 - -0.2
829,266 - +1.0
829,266 - +0.4
829,266 - +0.6
829,311 + -0.3
829,311 + -0.2
829,311 + -0.3
829,311 + -0.4
829,311 + -0.3
829,311 + +0.3
829,319 - -0.1
829,319 - +0.4
829,319 - +0.2
829,319 - +0.7
829,343 + -0.1
829,382 - +0.5
829,404 - Dsui_0818 0.11 +0.5
829,438 - Dsui_0818 0.15 +0.5
829,473 + Dsui_0818 0.18 +0.0
829,473 + Dsui_0818 0.18 +0.7
829,481 - Dsui_0818 0.19 -1.1
829,481 - Dsui_0818 0.19 +0.5
829,574 + Dsui_0818 0.27 +0.8

Or see this region's nucleotide sequence