Strain Fitness in Dechlorosoma suillum PS around Dsui_0815

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0814 and Dsui_0815 are separated by 90 nucleotidesDsui_0815 and Dsui_0816 are separated by 57 nucleotides Dsui_0814: Dsui_0814 - S1/P1 Nuclease, at 825,764 to 826,687 _0814 Dsui_0815: Dsui_0815 - Zn-dependent protease with chaperone function, at 826,778 to 827,623 _0815 Dsui_0816: Dsui_0816 - methionyl-tRNA formyltransferase, at 827,681 to 828,607 _0816 Position (kb) 826 827 828Strain fitness (log2 ratio) -2 -1 0 1 2at 825.818 kb on + strandat 825.832 kb on - strandat 825.871 kb on - strand, within Dsui_0814at 825.910 kb on + strand, within Dsui_0814at 825.918 kb on - strand, within Dsui_0814at 825.920 kb on + strand, within Dsui_0814at 825.920 kb on + strand, within Dsui_0814at 825.928 kb on - strand, within Dsui_0814at 825.929 kb on - strand, within Dsui_0814at 825.986 kb on - strand, within Dsui_0814at 825.998 kb on + strand, within Dsui_0814at 826.006 kb on - strand, within Dsui_0814at 826.079 kb on - strand, within Dsui_0814at 826.085 kb on + strand, within Dsui_0814at 826.109 kb on - strand, within Dsui_0814at 826.125 kb on + strand, within Dsui_0814at 826.135 kb on + strand, within Dsui_0814at 826.140 kb on + strand, within Dsui_0814at 826.192 kb on + strand, within Dsui_0814at 826.237 kb on + strand, within Dsui_0814at 826.242 kb on + strand, within Dsui_0814at 826.245 kb on - strand, within Dsui_0814at 826.249 kb on + strand, within Dsui_0814at 826.252 kb on - strand, within Dsui_0814at 826.254 kb on + strand, within Dsui_0814at 826.369 kb on + strand, within Dsui_0814at 826.379 kb on + strand, within Dsui_0814at 826.422 kb on + strand, within Dsui_0814at 826.461 kb on + strand, within Dsui_0814at 826.471 kb on + strand, within Dsui_0814at 826.471 kb on - strand, within Dsui_0814at 826.473 kb on + strand, within Dsui_0814at 826.491 kb on - strand, within Dsui_0814at 826.546 kb on + strand, within Dsui_0814at 826.591 kb on + strand, within Dsui_0814at 826.593 kb on - strand, within Dsui_0814at 826.606 kb on + strandat 826.614 kb on - strandat 826.633 kb on + strandat 826.641 kb on - strandat 826.663 kb on + strandat 826.699 kb on + strandat 826.699 kb on + strandat 826.707 kb on - strandat 826.707 kb on - strandat 826.707 kb on - strandat 826.753 kb on - strandat 826.854 kb on + strandat 826.854 kb on + strandat 826.862 kb on - strandat 826.926 kb on + strand, within Dsui_0815at 826.928 kb on - strand, within Dsui_0815at 826.952 kb on - strand, within Dsui_0815at 826.952 kb on - strand, within Dsui_0815at 826.952 kb on - strand, within Dsui_0815at 826.957 kb on - strand, within Dsui_0815at 826.976 kb on - strand, within Dsui_0815at 826.980 kb on + strand, within Dsui_0815at 827.015 kb on - strand, within Dsui_0815at 827.135 kb on - strand, within Dsui_0815at 827.155 kb on - strand, within Dsui_0815at 827.232 kb on - strand, within Dsui_0815at 827.259 kb on - strand, within Dsui_0815at 827.308 kb on - strand, within Dsui_0815at 827.328 kb on + strand, within Dsui_0815at 827.352 kb on + strand, within Dsui_0815at 827.352 kb on + strand, within Dsui_0815at 827.363 kb on + strand, within Dsui_0815at 827.363 kb on + strand, within Dsui_0815at 827.409 kb on - strand, within Dsui_0815at 827.413 kb on - strand, within Dsui_0815at 827.419 kb on - strand, within Dsui_0815at 827.450 kb on + strand, within Dsui_0815at 827.461 kb on + strand, within Dsui_0815at 827.507 kb on + strand, within Dsui_0815at 827.508 kb on + strand, within Dsui_0815at 827.508 kb on + strand, within Dsui_0815at 827.531 kb on + strand, within Dsui_0815at 827.531 kb on + strand, within Dsui_0815at 827.561 kb on - strandat 827.596 kb on + strandat 827.620 kb on - strandat 827.623 kb on + strandat 827.623 kb on + strandat 827.630 kb on + strandat 827.631 kb on - strandat 827.709 kb on + strandat 827.709 kb on + strandat 827.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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825,818 + +0.0
825,832 - -1.1
825,871 - Dsui_0814 0.12 -0.2
825,910 + Dsui_0814 0.16 -0.1
825,918 - Dsui_0814 0.17 +1.0
825,920 + Dsui_0814 0.17 +0.0
825,920 + Dsui_0814 0.17 +1.2
825,928 - Dsui_0814 0.18 +0.5
825,929 - Dsui_0814 0.18 +0.3
825,986 - Dsui_0814 0.24 +0.3
825,998 + Dsui_0814 0.25 +0.2
826,006 - Dsui_0814 0.26 +0.0
826,079 - Dsui_0814 0.34 -0.2
826,085 + Dsui_0814 0.35 +0.6
826,109 - Dsui_0814 0.37 -1.1
826,125 + Dsui_0814 0.39 +0.1
826,135 + Dsui_0814 0.40 +0.1
826,140 + Dsui_0814 0.41 -0.1
826,192 + Dsui_0814 0.46 +0.6
826,237 + Dsui_0814 0.51 +0.2
826,242 + Dsui_0814 0.52 +0.3
826,245 - Dsui_0814 0.52 +0.0
826,249 + Dsui_0814 0.52 +0.1
826,252 - Dsui_0814 0.53 +0.4
826,254 + Dsui_0814 0.53 +0.0
826,369 + Dsui_0814 0.65 +0.3
826,379 + Dsui_0814 0.67 +0.0
826,422 + Dsui_0814 0.71 +0.3
826,461 + Dsui_0814 0.75 +0.2
826,471 + Dsui_0814 0.77 -0.3
826,471 - Dsui_0814 0.77 -0.1
826,473 + Dsui_0814 0.77 -0.3
826,491 - Dsui_0814 0.79 +0.6
826,546 + Dsui_0814 0.85 +0.7
826,591 + Dsui_0814 0.90 +0.4
826,593 - Dsui_0814 0.90 +0.0
826,606 + +0.5
826,614 - +0.0
826,633 + -0.1
826,641 - +0.6
826,663 + +0.3
826,699 + +0.8
826,699 + -0.2
826,707 - +0.6
826,707 - -0.0
826,707 - -0.1
826,753 - -0.2
826,854 + -0.8
826,854 + +2.1
826,862 - -0.8
826,926 + Dsui_0815 0.17 -1.7
826,928 - Dsui_0815 0.18 +0.3
826,952 - Dsui_0815 0.21 -0.7
826,952 - Dsui_0815 0.21 -0.5
826,952 - Dsui_0815 0.21 -0.4
826,957 - Dsui_0815 0.21 -0.5
826,976 - Dsui_0815 0.23 -0.8
826,980 + Dsui_0815 0.24 -0.5
827,015 - Dsui_0815 0.28 -0.1
827,135 - Dsui_0815 0.42 -0.4
827,155 - Dsui_0815 0.45 -0.4
827,232 - Dsui_0815 0.54 +0.3
827,259 - Dsui_0815 0.57 -0.4
827,308 - Dsui_0815 0.63 -0.7
827,328 + Dsui_0815 0.65 -2.2
827,352 + Dsui_0815 0.68 -1.3
827,352 + Dsui_0815 0.68 +0.0
827,363 + Dsui_0815 0.69 -1.9
827,363 + Dsui_0815 0.69 -0.7
827,409 - Dsui_0815 0.75 -0.4
827,413 - Dsui_0815 0.75 -0.6
827,419 - Dsui_0815 0.76 -0.7
827,450 + Dsui_0815 0.79 -1.1
827,461 + Dsui_0815 0.81 +0.8
827,507 + Dsui_0815 0.86 +0.8
827,508 + Dsui_0815 0.86 -1.8
827,508 + Dsui_0815 0.86 -2.1
827,531 + Dsui_0815 0.89 +0.5
827,531 + Dsui_0815 0.89 -0.1
827,561 - -0.5
827,596 + -0.7
827,620 - -0.1
827,623 + -1.3
827,623 + +1.2
827,630 + -1.1
827,631 - -0.4
827,709 + +0.2
827,709 + -1.5
827,717 - +0.2

Or see this region's nucleotide sequence