Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0787 and Dsui_0788 overlap by 40 nucleotides Dsui_0788 and Dsui_0789 are separated by 256 nucleotides Dsui_0789 and Dsui_0790 are separated by 104 nucleotides
Dsui_0787: Dsui_0787 - putative membrane protein, at 794,134 to 794,580
_0787
Dsui_0788: Dsui_0788 - phosphosulfolactate phosphohydrolase-like enzyme, at 794,541 to 795,278
_0788
Dsui_0789: Dsui_0789 - diguanylate cyclase (GGDEF) domain-containing protein, at 795,535 to 796,566
_0789
Dsui_0790: Dsui_0790 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 796,671 to 797,705
_0790
Position (kb)
795
796
797 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 794.575 kb on + strand at 794.657 kb on + strand, within Dsui_0788 at 794.791 kb on + strand at 794.846 kb on + strand, within Dsui_0788 at 794.864 kb on - strand, within Dsui_0788 at 794.864 kb on - strand, within Dsui_0788 at 794.909 kb on - strand, within Dsui_0788 at 794.919 kb on + strand, within Dsui_0788 at 795.040 kb on - strand, within Dsui_0788 at 795.112 kb on - strand, within Dsui_0788 at 795.232 kb on + strand at 795.232 kb on + strand at 795.541 kb on - strand at 795.591 kb on - strand at 795.660 kb on + strand, within Dsui_0789 at 795.668 kb on - strand, within Dsui_0789 at 795.697 kb on + strand, within Dsui_0789 at 795.705 kb on - strand, within Dsui_0789 at 795.711 kb on - strand, within Dsui_0789 at 795.758 kb on - strand, within Dsui_0789 at 795.764 kb on + strand, within Dsui_0789 at 795.857 kb on - strand, within Dsui_0789 at 795.883 kb on - strand, within Dsui_0789 at 795.887 kb on + strand, within Dsui_0789 at 795.923 kb on - strand, within Dsui_0789 at 796.006 kb on - strand, within Dsui_0789 at 796.017 kb on + strand, within Dsui_0789 at 796.133 kb on - strand, within Dsui_0789 at 796.136 kb on + strand, within Dsui_0789 at 796.139 kb on - strand, within Dsui_0789 at 796.205 kb on + strand, within Dsui_0789 at 796.213 kb on - strand, within Dsui_0789 at 796.254 kb on + strand, within Dsui_0789 at 796.254 kb on + strand, within Dsui_0789 at 796.254 kb on + strand, within Dsui_0789 at 796.254 kb on + strand, within Dsui_0789 at 796.308 kb on + strand, within Dsui_0789 at 796.308 kb on + strand, within Dsui_0789 at 796.406 kb on + strand, within Dsui_0789 at 796.412 kb on + strand at 796.472 kb on - strand at 796.479 kb on + strand at 796.493 kb on + strand at 796.520 kb on - strand at 796.536 kb on - strand at 796.547 kb on - strand at 796.573 kb on + strand at 796.590 kb on - strand at 796.637 kb on + strand at 796.656 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 794,575 + +0.0 794,657 + Dsui_0788 0.16 -1.1 794,791 + +1.5 794,846 + Dsui_0788 0.41 -1.4 794,864 - Dsui_0788 0.44 -0.2 794,864 - Dsui_0788 0.44 +0.0 794,909 - Dsui_0788 0.50 -0.7 794,919 + Dsui_0788 0.51 -1.1 795,040 - Dsui_0788 0.68 -0.1 795,112 - Dsui_0788 0.77 -0.4 795,232 + -1.9 795,232 + -2.0 795,541 - +0.5 795,591 - +1.0 795,660 + Dsui_0789 0.12 -2.1 795,668 - Dsui_0789 0.13 -1.5 795,697 + Dsui_0789 0.16 -1.5 795,705 - Dsui_0789 0.16 +0.8 795,711 - Dsui_0789 0.17 -1.8 795,758 - Dsui_0789 0.22 -0.7 795,764 + Dsui_0789 0.22 -1.9 795,857 - Dsui_0789 0.31 -1.4 795,883 - Dsui_0789 0.34 -3.5 795,887 + Dsui_0789 0.34 -1.1 795,923 - Dsui_0789 0.38 -2.5 796,006 - Dsui_0789 0.46 -2.7 796,017 + Dsui_0789 0.47 -0.5 796,133 - Dsui_0789 0.58 +0.2 796,136 + Dsui_0789 0.58 -1.1 796,139 - Dsui_0789 0.59 +0.9 796,205 + Dsui_0789 0.65 -2.7 796,213 - Dsui_0789 0.66 -1.9 796,254 + Dsui_0789 0.70 -0.5 796,254 + Dsui_0789 0.70 -1.1 796,254 + Dsui_0789 0.70 -0.5 796,254 + Dsui_0789 0.70 +0.5 796,308 + Dsui_0789 0.75 -1.5 796,308 + Dsui_0789 0.75 -0.5 796,406 + Dsui_0789 0.84 -0.5 796,412 + +0.5 796,472 - +0.0 796,479 + +0.5 796,493 + +0.5 796,520 - -1.7 796,536 - -0.8 796,547 - -0.7 796,573 + -1.5 796,590 - -3.6 796,637 + -0.2 796,656 + -0.6
Or see this region's nucleotide sequence