Strain Fitness in Dechlorosoma suillum PS around Dsui_0788

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0786 and Dsui_0787 are separated by 10 nucleotidesDsui_0787 and Dsui_0788 overlap by 40 nucleotidesDsui_0788 and Dsui_0789 are separated by 256 nucleotides Dsui_0786: Dsui_0786 - Fe-S oxidoreductase, at 793,233 to 794,123 _0786 Dsui_0787: Dsui_0787 - putative membrane protein, at 794,134 to 794,580 _0787 Dsui_0788: Dsui_0788 - phosphosulfolactate phosphohydrolase-like enzyme, at 794,541 to 795,278 _0788 Dsui_0789: Dsui_0789 - diguanylate cyclase (GGDEF) domain-containing protein, at 795,535 to 796,566 _0789 Position (kb) 794 795 796Strain fitness (log2 ratio) -3 -2 -1 0 1at 793.561 kb on + strand, within Dsui_0786at 793.600 kb on - strand, within Dsui_0786at 793.607 kb on - strandat 793.659 kb on + strand, within Dsui_0786at 793.662 kb on - strand, within Dsui_0786at 793.704 kb on - strand, within Dsui_0786at 793.770 kb on - strand, within Dsui_0786at 793.948 kb on + strand, within Dsui_0786at 794.034 kb on + strand, within Dsui_0786at 794.047 kb on - strandat 794.086 kb on + strandat 794.108 kb on + strandat 794.118 kb on + strandat 794.167 kb on - strandat 794.268 kb on - strand, within Dsui_0787at 794.294 kb on - strand, within Dsui_0787at 794.411 kb on + strand, within Dsui_0787at 794.494 kb on + strand, within Dsui_0787at 794.505 kb on + strand, within Dsui_0787at 794.505 kb on + strand, within Dsui_0787at 794.505 kb on + strand, within Dsui_0787at 794.513 kb on - strand, within Dsui_0787at 794.513 kb on - strand, within Dsui_0787at 794.513 kb on - strand, within Dsui_0787at 794.575 kb on + strandat 794.657 kb on + strand, within Dsui_0788at 794.791 kb on + strandat 794.846 kb on + strand, within Dsui_0788at 794.864 kb on - strand, within Dsui_0788at 794.864 kb on - strand, within Dsui_0788at 794.909 kb on - strand, within Dsui_0788at 794.919 kb on + strand, within Dsui_0788at 795.040 kb on - strand, within Dsui_0788at 795.112 kb on - strand, within Dsui_0788at 795.232 kb on + strandat 795.232 kb on + strandat 795.541 kb on - strandat 795.591 kb on - strandat 795.660 kb on + strand, within Dsui_0789at 795.668 kb on - strand, within Dsui_0789at 795.697 kb on + strand, within Dsui_0789at 795.705 kb on - strand, within Dsui_0789at 795.711 kb on - strand, within Dsui_0789at 795.758 kb on - strand, within Dsui_0789at 795.764 kb on + strand, within Dsui_0789at 795.857 kb on - strand, within Dsui_0789at 795.883 kb on - strand, within Dsui_0789at 795.887 kb on + strand, within Dsui_0789at 795.923 kb on - strand, within Dsui_0789at 796.006 kb on - strand, within Dsui_0789at 796.017 kb on + strand, within Dsui_0789at 796.133 kb on - strand, within Dsui_0789at 796.136 kb on + strand, within Dsui_0789at 796.139 kb on - strand, within Dsui_0789at 796.205 kb on + strand, within Dsui_0789at 796.213 kb on - strand, within Dsui_0789at 796.254 kb on + strand, within Dsui_0789at 796.254 kb on + strand, within Dsui_0789at 796.254 kb on + strand, within Dsui_0789at 796.254 kb on + strand, within Dsui_0789

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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793,561 + Dsui_0786 0.37 +0.6
793,600 - Dsui_0786 0.41 +0.5
793,607 - +0.5
793,659 + Dsui_0786 0.48 -0.0
793,662 - Dsui_0786 0.48 +0.0
793,704 - Dsui_0786 0.53 -2.1
793,770 - Dsui_0786 0.60 -1.0
793,948 + Dsui_0786 0.80 -0.6
794,034 + Dsui_0786 0.90 +0.1
794,047 - -0.4
794,086 + -0.7
794,108 + +0.1
794,118 + -0.5
794,167 - -1.4
794,268 - Dsui_0787 0.30 +0.5
794,294 - Dsui_0787 0.36 +0.3
794,411 + Dsui_0787 0.62 -0.7
794,494 + Dsui_0787 0.81 -1.5
794,505 + Dsui_0787 0.83 -0.6
794,505 + Dsui_0787 0.83 -0.3
794,505 + Dsui_0787 0.83 -0.1
794,513 - Dsui_0787 0.85 -0.4
794,513 - Dsui_0787 0.85 -0.2
794,513 - Dsui_0787 0.85 -0.2
794,575 + +0.0
794,657 + Dsui_0788 0.16 -1.1
794,791 + +1.5
794,846 + Dsui_0788 0.41 -1.4
794,864 - Dsui_0788 0.44 -0.2
794,864 - Dsui_0788 0.44 +0.0
794,909 - Dsui_0788 0.50 -0.7
794,919 + Dsui_0788 0.51 -1.1
795,040 - Dsui_0788 0.68 -0.1
795,112 - Dsui_0788 0.77 -0.4
795,232 + -1.9
795,232 + -2.0
795,541 - +0.5
795,591 - +1.0
795,660 + Dsui_0789 0.12 -2.1
795,668 - Dsui_0789 0.13 -1.5
795,697 + Dsui_0789 0.16 -1.5
795,705 - Dsui_0789 0.16 +0.8
795,711 - Dsui_0789 0.17 -1.8
795,758 - Dsui_0789 0.22 -0.7
795,764 + Dsui_0789 0.22 -1.9
795,857 - Dsui_0789 0.31 -1.4
795,883 - Dsui_0789 0.34 -3.5
795,887 + Dsui_0789 0.34 -1.1
795,923 - Dsui_0789 0.38 -2.5
796,006 - Dsui_0789 0.46 -2.7
796,017 + Dsui_0789 0.47 -0.5
796,133 - Dsui_0789 0.58 +0.2
796,136 + Dsui_0789 0.58 -1.1
796,139 - Dsui_0789 0.59 +0.9
796,205 + Dsui_0789 0.65 -2.7
796,213 - Dsui_0789 0.66 -1.9
796,254 + Dsui_0789 0.70 -0.5
796,254 + Dsui_0789 0.70 -1.1
796,254 + Dsui_0789 0.70 -0.5
796,254 + Dsui_0789 0.70 +0.5

Or see this region's nucleotide sequence