Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0784 and Dsui_0785 are separated by 8 nucleotides Dsui_0785 and Dsui_0786 are separated by 117 nucleotides Dsui_0786 and Dsui_0787 are separated by 10 nucleotides Dsui_0787 and Dsui_0788 overlap by 40 nucleotides
Dsui_0784: Dsui_0784 - hypothetical protein, at 791,338 to 792,546
_0784
Dsui_0785: Dsui_0785 - hypothetical protein, at 792,555 to 793,115
_0785
Dsui_0786: Dsui_0786 - Fe-S oxidoreductase, at 793,233 to 794,123
_0786
Dsui_0787: Dsui_0787 - putative membrane protein, at 794,134 to 794,580
_0787
Dsui_0788: Dsui_0788 - phosphosulfolactate phosphohydrolase-like enzyme, at 794,541 to 795,278
_0788
Position (kb) 793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 792.242 kb on - strand, within Dsui_0784 at 792.242 kb on - strand, within Dsui_0784 at 792.246 kb on + strand, within Dsui_0784 at 792.254 kb on - strand, within Dsui_0784 at 792.312 kb on + strand, within Dsui_0784 at 792.320 kb on - strand, within Dsui_0784 at 792.320 kb on - strand, within Dsui_0784 at 792.346 kb on - strand, within Dsui_0784 at 792.438 kb on + strand at 792.446 kb on - strand at 792.512 kb on - strand at 792.577 kb on - strand at 792.577 kb on - strand at 792.595 kb on - strand at 792.600 kb on - strand at 792.641 kb on - strand, within Dsui_0785 at 792.643 kb on + strand, within Dsui_0785 at 792.663 kb on + strand, within Dsui_0785 at 792.714 kb on + strand, within Dsui_0785 at 792.727 kb on - strand, within Dsui_0785 at 792.746 kb on + strand, within Dsui_0785 at 792.746 kb on + strand, within Dsui_0785 at 792.754 kb on - strand, within Dsui_0785 at 792.754 kb on - strand, within Dsui_0785 at 792.754 kb on - strand, within Dsui_0785 at 792.774 kb on + strand at 792.774 kb on + strand, within Dsui_0785 at 792.856 kb on - strand, within Dsui_0785 at 792.923 kb on - strand, within Dsui_0785 at 792.960 kb on + strand, within Dsui_0785 at 793.015 kb on + strand, within Dsui_0785 at 793.124 kb on - strand at 793.154 kb on - strand at 793.169 kb on + strand at 793.287 kb on + strand at 793.326 kb on - strand, within Dsui_0786 at 793.351 kb on - strand, within Dsui_0786 at 793.354 kb on - strand at 793.356 kb on - strand, within Dsui_0786 at 793.427 kb on - strand, within Dsui_0786 at 793.462 kb on - strand, within Dsui_0786 at 793.476 kb on - strand, within Dsui_0786 at 793.476 kb on - strand, within Dsui_0786 at 793.502 kb on + strand, within Dsui_0786 at 793.502 kb on + strand, within Dsui_0786 at 793.561 kb on + strand, within Dsui_0786 at 793.600 kb on - strand, within Dsui_0786 at 793.607 kb on - strand at 793.659 kb on + strand, within Dsui_0786 at 793.662 kb on - strand, within Dsui_0786 at 793.704 kb on - strand, within Dsui_0786 at 793.770 kb on - strand, within Dsui_0786 at 793.948 kb on + strand, within Dsui_0786 at 794.034 kb on + strand, within Dsui_0786 at 794.047 kb on - strand at 794.086 kb on + strand at 794.108 kb on + strand at 794.118 kb on + strand at 794.167 kb on - strand at 794.268 kb on - strand, within Dsui_0787 at 794.294 kb on - strand, within Dsui_0787 at 794.411 kb on + strand, within Dsui_0787 at 794.494 kb on + strand, within Dsui_0787 at 794.505 kb on + strand, within Dsui_0787 at 794.505 kb on + strand, within Dsui_0787 at 794.505 kb on + strand, within Dsui_0787 at 794.513 kb on - strand, within Dsui_0787 at 794.513 kb on - strand, within Dsui_0787 at 794.513 kb on - strand, within Dsui_0787 at 794.575 kb on + strand at 794.657 kb on + strand, within Dsui_0788 at 794.791 kb on + strand at 794.846 kb on + strand, within Dsui_0788 at 794.864 kb on - strand, within Dsui_0788 at 794.864 kb on - strand, within Dsui_0788 at 794.909 kb on - strand, within Dsui_0788 at 794.919 kb on + strand, within Dsui_0788 at 795.040 kb on - strand, within Dsui_0788 at 795.112 kb on - strand, within Dsui_0788
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 792,242 - Dsui_0784 0.75 -3.2 792,242 - Dsui_0784 0.75 -1.1 792,246 + Dsui_0784 0.75 +0.5 792,254 - Dsui_0784 0.76 -0.6 792,312 + Dsui_0784 0.81 +0.5 792,320 - Dsui_0784 0.81 +0.1 792,320 - Dsui_0784 0.81 -1.1 792,346 - Dsui_0784 0.83 -0.9 792,438 + +0.5 792,446 - +0.1 792,512 - -1.0 792,577 - -0.6 792,577 - -0.8 792,595 - +1.5 792,600 - -0.6 792,641 - Dsui_0785 0.15 -0.9 792,643 + Dsui_0785 0.16 -2.7 792,663 + Dsui_0785 0.19 -2.7 792,714 + Dsui_0785 0.28 -0.5 792,727 - Dsui_0785 0.31 -0.5 792,746 + Dsui_0785 0.34 -0.5 792,746 + Dsui_0785 0.34 -2.3 792,754 - Dsui_0785 0.35 +0.2 792,754 - Dsui_0785 0.35 -0.5 792,754 - Dsui_0785 0.35 +0.5 792,774 + +0.5 792,774 + Dsui_0785 0.39 -0.5 792,856 - Dsui_0785 0.54 -0.4 792,923 - Dsui_0785 0.66 -0.7 792,960 + Dsui_0785 0.72 +0.5 793,015 + Dsui_0785 0.82 -0.5 793,124 - +0.1 793,154 - -0.3 793,169 + +0.5 793,287 + +0.3 793,326 - Dsui_0786 0.10 +0.5 793,351 - Dsui_0786 0.13 +0.5 793,354 - -0.5 793,356 - Dsui_0786 0.14 +0.5 793,427 - Dsui_0786 0.22 +2.0 793,462 - Dsui_0786 0.26 -0.5 793,476 - Dsui_0786 0.27 -2.5 793,476 - Dsui_0786 0.27 -1.9 793,502 + Dsui_0786 0.30 +0.0 793,502 + Dsui_0786 0.30 +0.5 793,561 + Dsui_0786 0.37 +0.6 793,600 - Dsui_0786 0.41 +0.5 793,607 - +0.5 793,659 + Dsui_0786 0.48 -0.0 793,662 - Dsui_0786 0.48 +0.0 793,704 - Dsui_0786 0.53 -2.1 793,770 - Dsui_0786 0.60 -1.0 793,948 + Dsui_0786 0.80 -0.6 794,034 + Dsui_0786 0.90 +0.1 794,047 - -0.4 794,086 + -0.7 794,108 + +0.1 794,118 + -0.5 794,167 - -1.4 794,268 - Dsui_0787 0.30 +0.5 794,294 - Dsui_0787 0.36 +0.3 794,411 + Dsui_0787 0.62 -0.7 794,494 + Dsui_0787 0.81 -1.5 794,505 + Dsui_0787 0.83 -0.6 794,505 + Dsui_0787 0.83 -0.3 794,505 + Dsui_0787 0.83 -0.1 794,513 - Dsui_0787 0.85 -0.4 794,513 - Dsui_0787 0.85 -0.2 794,513 - Dsui_0787 0.85 -0.2 794,575 + +0.0 794,657 + Dsui_0788 0.16 -1.1 794,791 + +1.5 794,846 + Dsui_0788 0.41 -1.4 794,864 - Dsui_0788 0.44 -0.2 794,864 - Dsui_0788 0.44 +0.0 794,909 - Dsui_0788 0.50 -0.7 794,919 + Dsui_0788 0.51 -1.1 795,040 - Dsui_0788 0.68 -0.1 795,112 - Dsui_0788 0.77 -0.4
Or see this region's nucleotide sequence