Strain Fitness in Dechlorosoma suillum PS around Dsui_0751

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0749 and Dsui_0750 are separated by 23 nucleotidesDsui_0750 and Dsui_0751 are separated by 1 nucleotidesDsui_0751 and Dsui_0752 are separated by 212 nucleotidesDsui_0752 and Dsui_0753 are separated by 130 nucleotides Dsui_0749: Dsui_0749 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 747,299 to 750,160 _0749 Dsui_0750: Dsui_0750 - hypothetical protein, at 750,184 to 750,516 _0750 Dsui_0751: Dsui_0751 - Eco57I restriction endonuclease, at 750,518 to 751,729 _0751 Dsui_0752: Dsui_0752 - hypothetical protein, at 751,942 to 752,103 _0752 Dsui_0753: Dsui_0753 - ATPase component of ABC transporters with duplicated ATPase domain, at 752,234 to 753,850 _0753 Position (kb) 750 751 752Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 749.576 kb on + strand, within Dsui_0749at 749.623 kb on - strand, within Dsui_0749at 749.635 kb on - strand, within Dsui_0749at 749.640 kb on - strandat 749.670 kb on + strand, within Dsui_0749at 749.677 kb on + strand, within Dsui_0749at 749.685 kb on - strand, within Dsui_0749at 749.885 kb on + strandat 749.909 kb on + strandat 749.922 kb on - strandat 749.998 kb on - strandat 750.102 kb on - strandat 750.143 kb on - strandat 750.203 kb on + strandat 750.290 kb on - strand, within Dsui_0750at 750.373 kb on + strand, within Dsui_0750at 750.387 kb on + strandat 750.399 kb on + strand, within Dsui_0750at 750.399 kb on + strand, within Dsui_0750at 750.407 kb on - strand, within Dsui_0750at 750.419 kb on - strand, within Dsui_0750at 750.425 kb on - strand, within Dsui_0750at 750.560 kb on + strandat 750.577 kb on - strandat 750.620 kb on + strandat 750.706 kb on - strand, within Dsui_0751at 750.797 kb on - strand, within Dsui_0751at 750.840 kb on - strand, within Dsui_0751at 750.947 kb on + strandat 750.965 kb on + strand, within Dsui_0751at 750.980 kb on - strand, within Dsui_0751at 751.044 kb on + strand, within Dsui_0751at 751.051 kb on + strand, within Dsui_0751at 751.052 kb on - strand, within Dsui_0751at 751.059 kb on - strand, within Dsui_0751at 751.106 kb on - strand, within Dsui_0751at 751.170 kb on - strand, within Dsui_0751at 751.184 kb on - strand, within Dsui_0751at 751.188 kb on + strand, within Dsui_0751at 751.191 kb on - strand, within Dsui_0751at 751.193 kb on + strand, within Dsui_0751at 751.317 kb on - strand, within Dsui_0751at 751.398 kb on - strand, within Dsui_0751at 751.458 kb on + strand, within Dsui_0751at 751.458 kb on + strand, within Dsui_0751at 751.466 kb on - strand, within Dsui_0751at 751.466 kb on - strand, within Dsui_0751at 751.466 kb on - strand, within Dsui_0751at 751.509 kb on - strand, within Dsui_0751at 751.514 kb on - strand, within Dsui_0751at 751.624 kb on - strandat 751.666 kb on - strandat 751.717 kb on - strandat 751.743 kb on + strandat 751.745 kb on - strandat 751.745 kb on - strandat 751.745 kb on - strandat 751.778 kb on + strandat 751.778 kb on + strandat 751.783 kb on + strandat 751.785 kb on - strandat 751.821 kb on + strandat 751.821 kb on + strandat 751.829 kb on - strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.876 kb on + strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.884 kb on - strandat 751.894 kb on - strandat 751.914 kb on + strandat 751.914 kb on + strandat 751.914 kb on + strandat 751.933 kb on + strandat 751.978 kb on + strand, within Dsui_0752at 752.028 kb on + strand, within Dsui_0752at 752.035 kb on + strand, within Dsui_0752at 752.036 kb on - strand, within Dsui_0752at 752.036 kb on - strandat 752.036 kb on - strand, within Dsui_0752at 752.040 kb on + strand, within Dsui_0752at 752.048 kb on - strand, within Dsui_0752at 752.059 kb on + strand, within Dsui_0752at 752.271 kb on - strandat 752.329 kb on + strandat 752.419 kb on + strand, within Dsui_0753at 752.438 kb on - strand, within Dsui_0753at 752.571 kb on + strand, within Dsui_0753at 752.680 kb on + strand, within Dsui_0753at 752.684 kb on + strand, within Dsui_0753

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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749,576 + Dsui_0749 0.80 +1.8
749,623 - Dsui_0749 0.81 -1.2
749,635 - Dsui_0749 0.82 -2.6
749,640 - -0.6
749,670 + Dsui_0749 0.83 -0.6
749,677 + Dsui_0749 0.83 -1.6
749,685 - Dsui_0749 0.83 -0.4
749,885 + -0.1
749,909 + -0.8
749,922 - +0.4
749,998 - -0.6
750,102 - +0.4
750,143 - +3.2
750,203 + +0.4
750,290 - Dsui_0750 0.32 -0.3
750,373 + Dsui_0750 0.57 -0.6
750,387 + -0.6
750,399 + Dsui_0750 0.65 -0.6
750,399 + Dsui_0750 0.65 -0.6
750,407 - Dsui_0750 0.67 -1.7
750,419 - Dsui_0750 0.71 +1.6
750,425 - Dsui_0750 0.72 -0.9
750,560 + -2.2
750,577 - -2.8
750,620 + -2.6
750,706 - Dsui_0751 0.16 -0.8
750,797 - Dsui_0751 0.23 -1.1
750,840 - Dsui_0751 0.27 -2.4
750,947 + +0.4
750,965 + Dsui_0751 0.37 -0.6
750,980 - Dsui_0751 0.38 -1.4
751,044 + Dsui_0751 0.43 -4.0
751,051 + Dsui_0751 0.44 -1.2
751,052 - Dsui_0751 0.44 -1.8
751,059 - Dsui_0751 0.45 -1.6
751,106 - Dsui_0751 0.49 -2.2
751,170 - Dsui_0751 0.54 -1.7
751,184 - Dsui_0751 0.55 -2.0
751,188 + Dsui_0751 0.55 +0.4
751,191 - Dsui_0751 0.56 -1.9
751,193 + Dsui_0751 0.56 -1.2
751,317 - Dsui_0751 0.66 -1.7
751,398 - Dsui_0751 0.73 -2.3
751,458 + Dsui_0751 0.78 -0.6
751,458 + Dsui_0751 0.78 -1.9
751,466 - Dsui_0751 0.78 -2.3
751,466 - Dsui_0751 0.78 -1.5
751,466 - Dsui_0751 0.78 -2.9
751,509 - Dsui_0751 0.82 -2.6
751,514 - Dsui_0751 0.82 -2.0
751,624 - -1.3
751,666 - -0.0
751,717 - -0.7
751,743 + -2.1
751,745 - -0.8
751,745 - -0.3
751,745 - +0.1
751,778 + +0.4
751,778 + -1.9
751,783 + -0.6
751,785 - -0.6
751,821 + +0.6
751,821 + +0.6
751,829 - -1.1
751,876 + +0.6
751,876 + +0.2
751,876 + +0.2
751,876 + +0.8
751,876 + +0.1
751,876 + +0.0
751,876 + -0.0
751,876 + -0.3
751,884 - -1.1
751,884 - +0.4
751,884 - -0.6
751,884 - -1.1
751,884 - -1.6
751,884 - +0.4
751,894 - -0.6
751,914 + +0.4
751,914 + -0.7
751,914 + -0.2
751,933 + +0.0
751,978 + Dsui_0752 0.22 -0.3
752,028 + Dsui_0752 0.53 -0.3
752,035 + Dsui_0752 0.57 -0.3
752,036 - Dsui_0752 0.58 -1.9
752,036 - -0.6
752,036 - Dsui_0752 0.58 +0.4
752,040 + Dsui_0752 0.60 +0.6
752,048 - Dsui_0752 0.65 -0.6
752,059 + Dsui_0752 0.72 +0.3
752,271 - -1.6
752,329 + +0.5
752,419 + Dsui_0753 0.11 +0.4
752,438 - Dsui_0753 0.13 -0.6
752,571 + Dsui_0753 0.21 +1.0
752,680 + Dsui_0753 0.28 +0.7
752,684 + Dsui_0753 0.28 -0.1

Or see this region's nucleotide sequence