Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0615 and Dsui_0616 are separated by 14 nucleotides Dsui_0616 and Dsui_0617 are separated by 3 nucleotides
Dsui_0615: Dsui_0615 - ABC-type transport system, involved in lipoprotein release, permease component, at 609,864 to 611,000
_0615
Dsui_0616: Dsui_0616 - ABC-type antimicrobial peptide transport system, ATPase component, at 611,015 to 611,689
_0616
Dsui_0617: Dsui_0617 - hypothetical protein, at 611,693 to 612,697
_0617
Position (kb) 611
612 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 610.053 kb on - strand, within Dsui_0615 at 610.081 kb on + strand, within Dsui_0615 at 610.166 kb on + strand, within Dsui_0615 at 610.181 kb on + strand, within Dsui_0615 at 610.191 kb on + strand, within Dsui_0615 at 610.200 kb on - strand, within Dsui_0615 at 610.328 kb on - strand, within Dsui_0615 at 610.375 kb on - strand, within Dsui_0615 at 610.552 kb on - strand, within Dsui_0615 at 610.858 kb on - strand, within Dsui_0615 at 611.088 kb on - strand at 611.206 kb on + strand, within Dsui_0616 at 611.206 kb on + strand, within Dsui_0616 at 611.214 kb on + strand, within Dsui_0616 at 611.315 kb on + strand, within Dsui_0616 at 611.508 kb on + strand, within Dsui_0616 at 611.618 kb on - strand, within Dsui_0616 at 612.047 kb on - strand, within Dsui_0617 at 612.422 kb on - strand, within Dsui_0617 at 612.578 kb on - strand at 612.603 kb on + strand at 612.675 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 610,053 - Dsui_0615 0.17 -2.6 610,081 + Dsui_0615 0.19 -0.8 610,166 + Dsui_0615 0.27 -0.5 610,181 + Dsui_0615 0.28 -2.8 610,191 + Dsui_0615 0.29 -0.2 610,200 - Dsui_0615 0.30 -1.4 610,328 - Dsui_0615 0.41 -1.9 610,375 - Dsui_0615 0.45 -2.8 610,552 - Dsui_0615 0.61 -0.6 610,858 - Dsui_0615 0.87 -2.9 611,088 - +0.4 611,206 + Dsui_0616 0.28 -0.9 611,206 + Dsui_0616 0.28 -0.6 611,214 + Dsui_0616 0.29 +0.6 611,315 + Dsui_0616 0.44 -1.2 611,508 + Dsui_0616 0.73 -3.9 611,618 - Dsui_0616 0.89 -1.6 612,047 - Dsui_0617 0.35 -0.6 612,422 - Dsui_0617 0.73 -1.6 612,578 - +0.4 612,603 + +0.4 612,675 + -1.3
Or see this region's nucleotide sequence