Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0604 and Dsui_0605 are separated by 16 nucleotides Dsui_0605 and Dsui_0606 are separated by 84 nucleotides
Dsui_0604: Dsui_0604 - pilus retraction protein PilT, at 598,978 to 600,021
_0604
Dsui_0605: Dsui_0605 - pilus retraction protein PilT, at 600,038 to 601,174
_0605
Dsui_0606: Dsui_0606 - putative N6-adenine-specific DNA methylase, at 601,259 to 602,431
_0606
Position (kb) 600
601
602 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 599.128 kb on + strand, within Dsui_0604 at 599.128 kb on + strand, within Dsui_0604 at 599.154 kb on + strand, within Dsui_0604 at 599.209 kb on - strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.356 kb on - strand, within Dsui_0604 at 599.369 kb on - strand at 599.385 kb on + strand, within Dsui_0604 at 599.387 kb on + strand, within Dsui_0604 at 599.398 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.479 kb on + strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.516 kb on + strand, within Dsui_0604 at 599.542 kb on - strand, within Dsui_0604 at 599.544 kb on + strand, within Dsui_0604 at 599.598 kb on + strand, within Dsui_0604 at 599.755 kb on - strand, within Dsui_0604 at 599.883 kb on - strand, within Dsui_0604 at 600.074 kb on - strand at 600.097 kb on - strand at 600.133 kb on - strand at 600.175 kb on - strand, within Dsui_0605 at 600.206 kb on - strand, within Dsui_0605 at 600.213 kb on + strand, within Dsui_0605 at 600.418 kb on + strand, within Dsui_0605 at 600.545 kb on - strand, within Dsui_0605 at 600.553 kb on - strand, within Dsui_0605 at 600.695 kb on - strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.860 kb on - strand, within Dsui_0605 at 600.968 kb on - strand, within Dsui_0605 at 601.245 kb on - strand at 601.258 kb on - strand at 601.310 kb on - strand at 601.314 kb on + strand at 601.407 kb on - strand, within Dsui_0606 at 601.445 kb on - strand, within Dsui_0606 at 601.560 kb on + strand, within Dsui_0606 at 601.697 kb on + strand, within Dsui_0606 at 601.702 kb on + strand, within Dsui_0606 at 601.882 kb on + strand at 601.986 kb on + strand, within Dsui_0606 at 602.163 kb on - strand, within Dsui_0606
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 599,128 + Dsui_0604 0.14 -0.6 599,128 + Dsui_0604 0.14 +0.8 599,154 + Dsui_0604 0.17 -0.4 599,209 - Dsui_0604 0.22 -2.6 599,291 + Dsui_0604 0.30 -0.4 599,291 + Dsui_0604 0.30 -0.2 599,291 + Dsui_0604 0.30 -0.6 599,291 + Dsui_0604 0.30 -0.7 599,356 - Dsui_0604 0.36 +0.4 599,369 - +0.4 599,385 + Dsui_0604 0.39 -0.7 599,387 + Dsui_0604 0.39 -0.4 599,398 - Dsui_0604 0.40 -1.2 599,447 - Dsui_0604 0.45 -1.6 599,447 - Dsui_0604 0.45 -2.8 599,479 + Dsui_0604 0.48 -0.4 599,487 - Dsui_0604 0.49 -2.2 599,487 - Dsui_0604 0.49 +0.4 599,516 + Dsui_0604 0.52 -2.1 599,542 - Dsui_0604 0.54 +0.4 599,544 + Dsui_0604 0.54 -0.4 599,598 + Dsui_0604 0.59 -0.4 599,755 - Dsui_0604 0.74 +0.4 599,883 - Dsui_0604 0.87 +0.4 600,074 - -1.6 600,097 - -1.2 600,133 - -1.2 600,175 - Dsui_0605 0.12 +0.4 600,206 - Dsui_0605 0.15 -0.9 600,213 + Dsui_0605 0.15 +0.9 600,418 + Dsui_0605 0.33 -0.2 600,545 - Dsui_0605 0.45 -1.2 600,553 - Dsui_0605 0.45 -1.6 600,695 - Dsui_0605 0.58 +0.4 600,828 + Dsui_0605 0.69 -0.3 600,828 + Dsui_0605 0.69 +0.0 600,828 + Dsui_0605 0.69 +0.5 600,836 - Dsui_0605 0.70 -1.9 600,836 - Dsui_0605 0.70 +0.4 600,836 - Dsui_0605 0.70 -0.8 600,860 - Dsui_0605 0.72 -2.4 600,968 - Dsui_0605 0.82 -0.9 601,245 - -0.4 601,258 - -2.3 601,310 - -0.4 601,314 + -1.9 601,407 - Dsui_0606 0.13 +0.4 601,445 - Dsui_0606 0.16 -0.0 601,560 + Dsui_0606 0.26 +0.1 601,697 + Dsui_0606 0.37 -1.6 601,702 + Dsui_0606 0.38 -0.6 601,882 + +0.4 601,986 + Dsui_0606 0.62 -0.6 602,163 - Dsui_0606 0.77 -0.7
Or see this region's nucleotide sequence