Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0575 and Dsui_0576 are separated by 21 nucleotides Dsui_0576 and Dsui_0577 overlap by 8 nucleotides Dsui_0577 and Dsui_0578 are separated by 14 nucleotides
Dsui_0575: Dsui_0575 - electron transfer flavoprotein, alpha subunit, at 573,191 to 574,273
_0575
Dsui_0576: Dsui_0576 - electron transfer flavoprotein, beta subunit, at 574,295 to 575,140
_0576
Dsui_0577: Dsui_0577 - Nitrogen fixation protein NifW, at 575,133 to 575,465
_0577
Dsui_0578: Dsui_0578 - homocitrate synthase NifV, at 575,480 to 576,634
_0578
Position (kb) 574
575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 573.332 kb on - strand, within Dsui_0575 at 573.334 kb on + strand, within Dsui_0575 at 573.484 kb on + strand, within Dsui_0575 at 573.716 kb on - strand, within Dsui_0575 at 573.737 kb on - strand, within Dsui_0575 at 573.864 kb on - strand, within Dsui_0575 at 573.904 kb on + strand at 573.964 kb on + strand, within Dsui_0575 at 574.022 kb on - strand, within Dsui_0575 at 574.065 kb on - strand, within Dsui_0575 at 574.077 kb on + strand, within Dsui_0575 at 574.095 kb on + strand, within Dsui_0575 at 574.155 kb on - strand, within Dsui_0575 at 574.202 kb on - strand at 574.273 kb on + strand at 574.283 kb on + strand at 574.301 kb on - strand at 574.341 kb on + strand at 574.344 kb on - strand at 574.349 kb on - strand at 574.360 kb on - strand at 574.362 kb on + strand at 574.461 kb on - strand, within Dsui_0576 at 574.519 kb on + strand, within Dsui_0576 at 574.591 kb on - strand, within Dsui_0576 at 574.592 kb on - strand, within Dsui_0576 at 575.106 kb on + strand at 575.116 kb on + strand at 575.124 kb on - strand at 575.135 kb on + strand at 575.150 kb on + strand at 575.150 kb on + strand at 575.195 kb on - strand, within Dsui_0577 at 575.329 kb on + strand, within Dsui_0577 at 575.348 kb on + strand, within Dsui_0577 at 575.348 kb on + strand, within Dsui_0577 at 575.467 kb on + strand at 575.470 kb on - strand at 575.556 kb on - strand at 575.578 kb on - strand at 575.604 kb on - strand, within Dsui_0578 at 575.628 kb on - strand, within Dsui_0578 at 575.706 kb on + strand, within Dsui_0578 at 575.962 kb on + strand, within Dsui_0578 at 575.977 kb on - strand, within Dsui_0578 at 575.982 kb on + strand, within Dsui_0578 at 575.990 kb on - strand, within Dsui_0578
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 573,332 - Dsui_0575 0.13 -0.6 573,334 + Dsui_0575 0.13 +0.4 573,484 + Dsui_0575 0.27 -1.2 573,716 - Dsui_0575 0.48 -3.3 573,737 - Dsui_0575 0.50 +0.4 573,864 - Dsui_0575 0.62 -1.6 573,904 + +0.4 573,964 + Dsui_0575 0.71 +0.4 574,022 - Dsui_0575 0.77 -0.3 574,065 - Dsui_0575 0.81 -1.2 574,077 + Dsui_0575 0.82 +0.4 574,095 + Dsui_0575 0.83 +0.4 574,155 - Dsui_0575 0.89 -1.6 574,202 - -0.6 574,273 + -1.2 574,283 + +0.4 574,301 - -1.2 574,341 + +0.4 574,344 - -0.6 574,349 - -1.6 574,360 - -1.9 574,362 + -0.6 574,461 - Dsui_0576 0.20 +0.4 574,519 + Dsui_0576 0.26 -1.6 574,591 - Dsui_0576 0.35 -1.6 574,592 - Dsui_0576 0.35 +0.4 575,106 + -1.6 575,116 + +0.4 575,124 - +0.4 575,135 + -1.2 575,150 + +0.4 575,150 + +0.4 575,195 - Dsui_0577 0.19 -2.8 575,329 + Dsui_0577 0.59 -1.2 575,348 + Dsui_0577 0.65 +0.4 575,348 + Dsui_0577 0.65 +0.4 575,467 + -0.6 575,470 - -2.6 575,556 - -1.2 575,578 - -0.6 575,604 - Dsui_0578 0.11 -0.6 575,628 - Dsui_0578 0.13 +0.4 575,706 + Dsui_0578 0.20 +0.4 575,962 + Dsui_0578 0.42 -2.2 575,977 - Dsui_0578 0.43 -0.6 575,982 + Dsui_0578 0.43 -0.6 575,990 - Dsui_0578 0.44 -1.9
Or see this region's nucleotide sequence