Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0541 and Dsui_0542 are separated by 117 nucleotides Dsui_0542 and Dsui_0543 are separated by 228 nucleotides
Dsui_0541: Dsui_0541 - cobalamin biosynthesis protein CobD, at 545,123 to 546,094
_0541
Dsui_0542: Dsui_0542 - cobyric acid synthase CobQ, at 546,212 to 547,705
_0542
Dsui_0543: Dsui_0543 - malic enzyme, at 547,934 to 550,210
_0543
Position (kb) 546
547
548 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 545.537 kb on - strand, within Dsui_0541 at 545.556 kb on + strand, within Dsui_0541 at 545.564 kb on - strand, within Dsui_0541 at 545.612 kb on - strand, within Dsui_0541 at 545.612 kb on - strand, within Dsui_0541 at 545.650 kb on - strand, within Dsui_0541 at 545.671 kb on - strand, within Dsui_0541 at 545.671 kb on - strand, within Dsui_0541 at 545.671 kb on - strand, within Dsui_0541 at 545.682 kb on - strand, within Dsui_0541 at 545.682 kb on - strand, within Dsui_0541 at 545.697 kb on - strand, within Dsui_0541 at 545.733 kb on + strand at 545.738 kb on + strand, within Dsui_0541 at 545.799 kb on - strand, within Dsui_0541 at 545.861 kb on + strand at 545.886 kb on - strand, within Dsui_0541 at 545.922 kb on - strand, within Dsui_0541 at 546.037 kb on - strand at 546.076 kb on + strand at 546.079 kb on - strand at 546.084 kb on - strand at 546.084 kb on - strand at 546.175 kb on + strand at 546.225 kb on + strand at 546.225 kb on + strand at 546.233 kb on + strand at 546.233 kb on + strand at 546.238 kb on + strand at 546.241 kb on - strand at 546.241 kb on - strand at 546.241 kb on - strand at 546.241 kb on - strand at 546.241 kb on - strand at 546.385 kb on + strand at 546.393 kb on - strand, within Dsui_0542 at 546.747 kb on + strand, within Dsui_0542 at 546.755 kb on - strand, within Dsui_0542 at 546.757 kb on + strand, within Dsui_0542 at 546.783 kb on + strand, within Dsui_0542 at 546.846 kb on + strand, within Dsui_0542 at 546.900 kb on + strand, within Dsui_0542 at 546.900 kb on + strand, within Dsui_0542 at 546.950 kb on + strand, within Dsui_0542 at 546.970 kb on + strand, within Dsui_0542 at 547.002 kb on + strand at 547.049 kb on + strand, within Dsui_0542 at 547.131 kb on - strand, within Dsui_0542 at 547.262 kb on + strand, within Dsui_0542 at 547.374 kb on - strand, within Dsui_0542 at 547.424 kb on + strand, within Dsui_0542 at 547.432 kb on - strand, within Dsui_0542 at 547.622 kb on + strand at 547.918 kb on + strand at 547.918 kb on + strand at 547.924 kb on + strand at 547.925 kb on + strand at 547.926 kb on - strand at 548.015 kb on + strand at 548.071 kb on - strand at 548.092 kb on + strand at 548.098 kb on - strand at 548.100 kb on - strand at 548.100 kb on - strand at 548.172 kb on - strand, within Dsui_0543 at 548.307 kb on + strand, within Dsui_0543 at 548.482 kb on + strand, within Dsui_0543 at 548.593 kb on + strand, within Dsui_0543 at 548.613 kb on - strand, within Dsui_0543 at 548.613 kb on - strand at 548.688 kb on - strand, within Dsui_0543
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 545,537 - Dsui_0541 0.43 -1.2 545,556 + Dsui_0541 0.45 -2.2 545,564 - Dsui_0541 0.45 -0.3 545,612 - Dsui_0541 0.50 -0.4 545,612 - Dsui_0541 0.50 -1.6 545,650 - Dsui_0541 0.54 -4.7 545,671 - Dsui_0541 0.56 +0.4 545,671 - Dsui_0541 0.56 -2.2 545,671 - Dsui_0541 0.56 -1.6 545,682 - Dsui_0541 0.58 -0.1 545,682 - Dsui_0541 0.58 -0.4 545,697 - Dsui_0541 0.59 -3.7 545,733 + -1.2 545,738 + Dsui_0541 0.63 -2.4 545,799 - Dsui_0541 0.70 +0.6 545,861 + -1.2 545,886 - Dsui_0541 0.78 -0.7 545,922 - Dsui_0541 0.82 -1.0 546,037 - -0.9 546,076 + +0.4 546,079 - -0.1 546,084 - +0.5 546,084 - -1.2 546,175 + -1.2 546,225 + -0.6 546,225 + -0.6 546,233 + -1.6 546,233 + +1.1 546,238 + -2.6 546,241 - -1.6 546,241 - +0.4 546,241 - -0.6 546,241 - +0.4 546,241 - +0.4 546,385 + -0.6 546,393 - Dsui_0542 0.12 -0.6 546,747 + Dsui_0542 0.36 -0.6 546,755 - Dsui_0542 0.36 -0.6 546,757 + Dsui_0542 0.36 +0.4 546,783 + Dsui_0542 0.38 -2.4 546,846 + Dsui_0542 0.42 -1.6 546,900 + Dsui_0542 0.46 -1.2 546,900 + Dsui_0542 0.46 -1.8 546,950 + Dsui_0542 0.49 -3.3 546,970 + Dsui_0542 0.51 -2.4 547,002 + +0.4 547,049 + Dsui_0542 0.56 +0.8 547,131 - Dsui_0542 0.62 -0.6 547,262 + Dsui_0542 0.70 -1.4 547,374 - Dsui_0542 0.78 -2.2 547,424 + Dsui_0542 0.81 -2.5 547,432 - Dsui_0542 0.82 -2.6 547,622 + -0.4 547,918 + +0.1 547,918 + +0.8 547,924 + -0.2 547,925 + +1.2 547,926 - -0.6 548,015 + -0.3 548,071 - -0.6 548,092 + +0.4 548,098 - -2.2 548,100 - +0.4 548,100 - +0.6 548,172 - Dsui_0543 0.10 -0.6 548,307 + Dsui_0543 0.16 +0.2 548,482 + Dsui_0543 0.24 -0.5 548,593 + Dsui_0543 0.29 +0.2 548,613 - Dsui_0543 0.30 -0.2 548,613 - +0.4 548,688 - Dsui_0543 0.33 -2.4
Or see this region's nucleotide sequence