Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0508 and Dsui_0509 are separated by 89 nucleotides Dsui_0509 and Dsui_0510 overlap by 4 nucleotides Dsui_0510 and Dsui_0511 are separated by 10 nucleotides
Dsui_0508: Dsui_0508 - periplasmic nitrate reductase, large subunit, at 511,069 to 513,594
_0508
Dsui_0509: Dsui_0509 - MauM/NapG family ferredoxin-type protein, at 513,684 to 514,664
_0509
Dsui_0510: Dsui_0510 - ferredoxin-type protein, NapH/MauN family, at 514,661 to 515,581
_0510
Dsui_0511: Dsui_0511 - nitrate reductase cytochrome c-type subunit, at 515,592 to 516,068
_0511
Position (kb) 513
514
515 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 512.751 kb on + strand, within Dsui_0508 at 512.764 kb on + strand, within Dsui_0508 at 512.764 kb on + strand, within Dsui_0508 at 512.772 kb on - strand, within Dsui_0508 at 512.868 kb on + strand, within Dsui_0508 at 512.900 kb on + strand, within Dsui_0508 at 512.924 kb on + strand, within Dsui_0508 at 512.934 kb on + strand, within Dsui_0508 at 512.942 kb on - strand at 512.942 kb on - strand, within Dsui_0508 at 512.942 kb on - strand at 512.973 kb on - strand, within Dsui_0508 at 513.085 kb on + strand, within Dsui_0508 at 513.132 kb on - strand, within Dsui_0508 at 513.132 kb on - strand, within Dsui_0508 at 513.138 kb on + strand, within Dsui_0508 at 513.146 kb on - strand, within Dsui_0508 at 513.157 kb on - strand, within Dsui_0508 at 513.238 kb on + strand, within Dsui_0508 at 513.252 kb on + strand, within Dsui_0508 at 513.252 kb on + strand, within Dsui_0508 at 513.260 kb on - strand, within Dsui_0508 at 513.260 kb on - strand, within Dsui_0508 at 513.318 kb on + strand, within Dsui_0508 at 513.326 kb on - strand, within Dsui_0508 at 513.326 kb on - strand, within Dsui_0508 at 513.332 kb on - strand at 513.469 kb on + strand at 513.515 kb on + strand at 513.572 kb on + strand at 513.643 kb on + strand at 513.786 kb on + strand, within Dsui_0509 at 513.963 kb on + strand, within Dsui_0509 at 513.999 kb on - strand, within Dsui_0509 at 514.085 kb on + strand, within Dsui_0509 at 514.095 kb on + strand, within Dsui_0509 at 514.098 kb on - strand, within Dsui_0509 at 514.103 kb on - strand at 514.109 kb on + strand, within Dsui_0509 at 514.166 kb on + strand, within Dsui_0509 at 514.195 kb on + strand, within Dsui_0509 at 514.195 kb on + strand, within Dsui_0509 at 514.203 kb on - strand, within Dsui_0509 at 514.203 kb on - strand, within Dsui_0509 at 514.214 kb on + strand, within Dsui_0509 at 514.263 kb on - strand, within Dsui_0509 at 514.363 kb on - strand at 514.425 kb on - strand, within Dsui_0509 at 514.456 kb on - strand, within Dsui_0509 at 514.474 kb on + strand at 514.549 kb on + strand, within Dsui_0509 at 514.585 kb on + strand at 514.827 kb on - strand at 514.840 kb on - strand at 514.854 kb on - strand, within Dsui_0510 at 514.905 kb on + strand, within Dsui_0510 at 514.971 kb on + strand, within Dsui_0510 at 515.041 kb on - strand, within Dsui_0510 at 515.124 kb on + strand, within Dsui_0510 at 515.125 kb on - strand at 515.162 kb on + strand, within Dsui_0510 at 515.516 kb on + strand at 515.558 kb on + strand at 515.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 512,751 + Dsui_0508 0.67 +0.3 512,764 + Dsui_0508 0.67 +0.3 512,764 + Dsui_0508 0.67 +0.3 512,772 - Dsui_0508 0.67 -2.5 512,868 + Dsui_0508 0.71 -0.7 512,900 + Dsui_0508 0.72 -1.2 512,924 + Dsui_0508 0.73 +0.6 512,934 + Dsui_0508 0.74 +0.3 512,942 - +0.3 512,942 - Dsui_0508 0.74 +0.3 512,942 - +0.3 512,973 - Dsui_0508 0.75 +0.3 513,085 + Dsui_0508 0.80 +0.3 513,132 - Dsui_0508 0.82 -0.7 513,132 - Dsui_0508 0.82 +0.3 513,138 + Dsui_0508 0.82 -2.0 513,146 - Dsui_0508 0.82 -0.7 513,157 - Dsui_0508 0.83 -1.2 513,238 + Dsui_0508 0.86 -1.2 513,252 + Dsui_0508 0.86 -3.8 513,252 + Dsui_0508 0.86 -1.2 513,260 - Dsui_0508 0.87 +0.4 513,260 - Dsui_0508 0.87 -0.6 513,318 + Dsui_0508 0.89 -1.2 513,326 - Dsui_0508 0.89 +0.4 513,326 - Dsui_0508 0.89 -2.2 513,332 - +0.4 513,469 + -0.4 513,515 + +0.4 513,572 + -0.6 513,643 + +0.4 513,786 + Dsui_0509 0.10 -2.5 513,963 + Dsui_0509 0.28 -2.2 513,999 - Dsui_0509 0.32 -1.3 514,085 + Dsui_0509 0.41 -1.2 514,095 + Dsui_0509 0.42 +0.4 514,098 - Dsui_0509 0.42 -1.6 514,103 - +0.4 514,109 + Dsui_0509 0.43 -1.6 514,166 + Dsui_0509 0.49 +0.4 514,195 + Dsui_0509 0.52 -1.2 514,195 + Dsui_0509 0.52 -1.6 514,203 - Dsui_0509 0.53 -2.0 514,203 - Dsui_0509 0.53 -0.6 514,214 + Dsui_0509 0.54 -2.5 514,263 - Dsui_0509 0.59 -1.2 514,363 - +0.4 514,425 - Dsui_0509 0.76 +0.4 514,456 - Dsui_0509 0.79 -0.6 514,474 + +0.4 514,549 + Dsui_0509 0.88 -1.6 514,585 + +0.4 514,827 - +0.4 514,840 - -0.6 514,854 - Dsui_0510 0.21 -1.2 514,905 + Dsui_0510 0.26 +0.4 514,971 + Dsui_0510 0.34 -0.6 515,041 - Dsui_0510 0.41 -0.6 515,124 + Dsui_0510 0.50 -2.0 515,125 - -0.6 515,162 + Dsui_0510 0.54 -1.2 515,516 + +0.4 515,558 + -1.6 515,615 - -0.6
Or see this region's nucleotide sequence