Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0504 and Dsui_0505 are separated by 55 nucleotides Dsui_0505 and Dsui_0506 are separated by 51 nucleotides Dsui_0506 and Dsui_0507 are separated by 301 nucleotides Dsui_0507 and Dsui_0508 are separated by 1 nucleotides
Dsui_0504: Dsui_0504 - putative membrane protein, at 506,470 to 507,375
_0504
Dsui_0505: Dsui_0505 - 7-cyano-7-deazaguanine reductase, at 507,431 to 508,264
_0505
Dsui_0506: Dsui_0506 - diguanylate cyclase (GGDEF) domain-containing protein, at 508,316 to 510,517
_0506
Dsui_0507: Dsui_0507 - uncharacterized protein involved in formation of periplasmic nitrate reductase, at 510,819 to 511,067
_0507
Dsui_0508: Dsui_0508 - periplasmic nitrate reductase, large subunit, at 511,069 to 513,594
_0508
Position (kb)
508
509
510
511 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 507.351 kb on + strand at 507.352 kb on + strand at 507.357 kb on + strand at 507.365 kb on - strand at 507.369 kb on + strand at 507.369 kb on + strand at 507.503 kb on - strand at 507.622 kb on + strand, within Dsui_0505 at 507.622 kb on + strand, within Dsui_0505 at 507.640 kb on - strand at 507.669 kb on + strand, within Dsui_0505 at 507.669 kb on + strand, within Dsui_0505 at 507.677 kb on - strand, within Dsui_0505 at 507.693 kb on + strand, within Dsui_0505 at 507.706 kb on + strand, within Dsui_0505 at 507.714 kb on + strand, within Dsui_0505 at 507.721 kb on + strand, within Dsui_0505 at 507.728 kb on + strand, within Dsui_0505 at 507.871 kb on - strand at 507.967 kb on + strand, within Dsui_0505 at 508.034 kb on - strand, within Dsui_0505 at 508.037 kb on + strand, within Dsui_0505 at 508.105 kb on + strand, within Dsui_0505 at 508.148 kb on + strand, within Dsui_0505 at 508.153 kb on + strand, within Dsui_0505 at 508.161 kb on - strand, within Dsui_0505 at 508.442 kb on - strand at 508.457 kb on + strand at 508.465 kb on - strand at 508.488 kb on - strand at 508.552 kb on + strand, within Dsui_0506 at 508.559 kb on - strand, within Dsui_0506 at 508.577 kb on - strand, within Dsui_0506 at 508.599 kb on - strand, within Dsui_0506 at 508.635 kb on + strand, within Dsui_0506 at 508.649 kb on + strand, within Dsui_0506 at 508.649 kb on + strand, within Dsui_0506 at 508.657 kb on - strand, within Dsui_0506 at 508.757 kb on - strand, within Dsui_0506 at 508.895 kb on + strand, within Dsui_0506 at 508.978 kb on - strand, within Dsui_0506 at 508.993 kb on + strand at 508.993 kb on + strand, within Dsui_0506 at 508.993 kb on + strand, within Dsui_0506 at 508.993 kb on + strand, within Dsui_0506 at 508.993 kb on + strand, within Dsui_0506 at 509.065 kb on + strand, within Dsui_0506 at 509.159 kb on - strand, within Dsui_0506 at 509.238 kb on + strand, within Dsui_0506 at 509.238 kb on + strand, within Dsui_0506 at 509.246 kb on - strand, within Dsui_0506 at 509.306 kb on + strand, within Dsui_0506 at 509.306 kb on - strand, within Dsui_0506 at 509.400 kb on - strand, within Dsui_0506 at 509.407 kb on - strand, within Dsui_0506 at 509.438 kb on + strand, within Dsui_0506 at 509.443 kb on + strand, within Dsui_0506 at 509.443 kb on + strand, within Dsui_0506 at 509.443 kb on + strand, within Dsui_0506 at 509.443 kb on + strand, within Dsui_0506 at 509.443 kb on + strand at 509.459 kb on + strand, within Dsui_0506 at 509.467 kb on - strand, within Dsui_0506 at 509.490 kb on + strand, within Dsui_0506 at 509.498 kb on - strand, within Dsui_0506 at 509.498 kb on - strand, within Dsui_0506 at 509.582 kb on + strand, within Dsui_0506 at 509.670 kb on - strand, within Dsui_0506 at 509.722 kb on - strand, within Dsui_0506 at 509.751 kb on - strand, within Dsui_0506 at 509.809 kb on - strand, within Dsui_0506 at 509.814 kb on + strand, within Dsui_0506 at 509.822 kb on - strand, within Dsui_0506 at 509.932 kb on + strand at 509.932 kb on + strand, within Dsui_0506 at 509.932 kb on + strand, within Dsui_0506 at 509.935 kb on - strand, within Dsui_0506 at 509.940 kb on - strand, within Dsui_0506 at 509.980 kb on + strand, within Dsui_0506 at 510.058 kb on - strand, within Dsui_0506 at 510.097 kb on - strand, within Dsui_0506 at 510.134 kb on - strand, within Dsui_0506 at 510.139 kb on + strand, within Dsui_0506 at 510.147 kb on - strand, within Dsui_0506 at 510.282 kb on + strand, within Dsui_0506 at 510.287 kb on + strand at 510.290 kb on - strand, within Dsui_0506 at 510.325 kb on - strand at 510.334 kb on + strand at 510.334 kb on + strand at 510.342 kb on - strand at 510.361 kb on + strand at 510.361 kb on + strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.409 kb on + strand at 510.452 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.600 kb on - strand at 510.644 kb on + strand at 510.659 kb on + strand at 510.699 kb on - strand at 510.699 kb on - strand at 510.754 kb on + strand at 510.762 kb on - strand at 510.762 kb on - strand at 510.773 kb on - strand at 510.847 kb on - strand, within Dsui_0507 at 510.879 kb on + strand, within Dsui_0507 at 510.916 kb on + strand, within Dsui_0507 at 510.979 kb on + strand, within Dsui_0507 at 511.022 kb on - strand, within Dsui_0507 at 511.072 kb on + strand at 511.314 kb on - strand at 511.317 kb on + strand at 511.366 kb on + strand, within Dsui_0508 at 511.430 kb on + strand, within Dsui_0508 at 511.464 kb on + strand, within Dsui_0508
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 507,351 + -0.5 507,352 + -0.1 507,357 + -0.0 507,365 - -2.7 507,369 + -2.5 507,369 + -0.3 507,503 - +0.4 507,622 + Dsui_0505 0.23 -1.2 507,622 + Dsui_0505 0.23 -2.8 507,640 - +0.4 507,669 + Dsui_0505 0.29 -0.3 507,669 + Dsui_0505 0.29 -0.9 507,677 - Dsui_0505 0.29 -0.6 507,693 + Dsui_0505 0.31 -1.6 507,706 + Dsui_0505 0.33 -0.4 507,714 + Dsui_0505 0.34 -2.6 507,721 + Dsui_0505 0.35 -1.6 507,728 + Dsui_0505 0.36 -0.3 507,871 - +0.4 507,967 + Dsui_0505 0.64 +1.7 508,034 - Dsui_0505 0.72 -1.2 508,037 + Dsui_0505 0.73 -0.6 508,105 + Dsui_0505 0.81 -2.6 508,148 + Dsui_0505 0.86 -2.2 508,153 + Dsui_0505 0.87 -0.5 508,161 - Dsui_0505 0.88 +0.4 508,442 - -0.2 508,457 + -1.4 508,465 - -1.1 508,488 - +0.2 508,552 + Dsui_0506 0.11 -2.2 508,559 - Dsui_0506 0.11 -0.3 508,577 - Dsui_0506 0.12 +1.2 508,599 - Dsui_0506 0.13 -3.0 508,635 + Dsui_0506 0.14 -1.6 508,649 + Dsui_0506 0.15 +0.9 508,649 + Dsui_0506 0.15 +1.5 508,657 - Dsui_0506 0.15 -1.6 508,757 - Dsui_0506 0.20 -0.2 508,895 + Dsui_0506 0.26 -0.6 508,978 - Dsui_0506 0.30 -0.7 508,993 + +0.4 508,993 + Dsui_0506 0.31 -1.2 508,993 + Dsui_0506 0.31 -2.0 508,993 + Dsui_0506 0.31 -1.2 508,993 + Dsui_0506 0.31 +0.4 509,065 + Dsui_0506 0.34 +0.4 509,159 - Dsui_0506 0.38 -3.0 509,238 + Dsui_0506 0.42 -2.6 509,238 + Dsui_0506 0.42 +0.4 509,246 - Dsui_0506 0.42 -2.5 509,306 + Dsui_0506 0.45 +0.4 509,306 - Dsui_0506 0.45 +0.2 509,400 - Dsui_0506 0.49 -0.6 509,407 - Dsui_0506 0.50 -0.2 509,438 + Dsui_0506 0.51 -0.6 509,443 + Dsui_0506 0.51 +0.4 509,443 + Dsui_0506 0.51 +0.4 509,443 + Dsui_0506 0.51 -1.6 509,443 + Dsui_0506 0.51 -1.2 509,443 + +0.4 509,459 + Dsui_0506 0.52 -2.2 509,467 - Dsui_0506 0.52 -0.6 509,490 + Dsui_0506 0.53 +0.4 509,498 - Dsui_0506 0.54 -1.3 509,498 - Dsui_0506 0.54 -0.2 509,582 + Dsui_0506 0.57 -1.6 509,670 - Dsui_0506 0.61 -0.5 509,722 - Dsui_0506 0.64 -0.1 509,751 - Dsui_0506 0.65 -0.8 509,809 - Dsui_0506 0.68 -3.2 509,814 + Dsui_0506 0.68 -0.6 509,822 - Dsui_0506 0.68 -2.0 509,932 + -0.6 509,932 + Dsui_0506 0.73 -3.8 509,932 + Dsui_0506 0.73 -0.6 509,935 - Dsui_0506 0.74 -1.5 509,940 - Dsui_0506 0.74 -0.5 509,980 + Dsui_0506 0.76 +0.4 510,058 - Dsui_0506 0.79 -1.7 510,097 - Dsui_0506 0.81 -0.6 510,134 - Dsui_0506 0.83 -2.0 510,139 + Dsui_0506 0.83 -0.6 510,147 - Dsui_0506 0.83 +0.6 510,282 + Dsui_0506 0.89 -1.2 510,287 + -0.7 510,290 - Dsui_0506 0.90 -1.8 510,325 - -1.2 510,334 + -0.7 510,334 + -1.2 510,342 - +0.1 510,361 + -0.7 510,361 + -2.7 510,369 - -1.0 510,369 - -0.7 510,369 - -0.7 510,369 - +0.6 510,369 - -0.7 510,409 + +0.3 510,452 + -2.7 510,512 + -2.7 510,512 + +0.3 510,512 + +0.3 510,512 + -0.7 510,600 - -0.4 510,644 + -0.7 510,659 + +0.3 510,699 - -1.2 510,699 - -2.0 510,754 + -1.2 510,762 - -1.2 510,762 - +0.3 510,773 - +0.3 510,847 - Dsui_0507 0.11 -2.2 510,879 + Dsui_0507 0.24 -1.7 510,916 + Dsui_0507 0.39 +0.3 510,979 + Dsui_0507 0.64 +0.3 511,022 - Dsui_0507 0.82 +0.3 511,072 + -3.1 511,314 - +0.3 511,317 + +0.3 511,366 + Dsui_0508 0.12 -2.5 511,430 + Dsui_0508 0.14 -1.2 511,464 + Dsui_0508 0.16 -1.5
Or see this region's nucleotide sequence