Strain Fitness in Dechlorosoma suillum PS around Dsui_0496

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0494 and Dsui_0495 are separated by 9 nucleotidesDsui_0495 and Dsui_0496 overlap by 4 nucleotidesDsui_0496 and Dsui_0497 are separated by 137 nucleotides Dsui_0494: Dsui_0494 - ribonuclease PH, at 496,759 to 497,475 _0494 Dsui_0495: Dsui_0495 - serine/threonine protein phosphatase, at 497,485 to 498,396 _0495 Dsui_0496: Dsui_0496 - serine/threonine protein kinase, at 498,393 to 499,358 _0496 Dsui_0497: Dsui_0497 - TIGR00255 family protein, at 499,496 to 500,362 _0497 Position (kb) 498 499 500Strain fitness (log2 ratio) -2 -1 0 1at 497.567 kb on + strandat 497.662 kb on - strand, within Dsui_0495at 497.662 kb on - strand, within Dsui_0495at 497.759 kb on - strand, within Dsui_0495at 497.773 kb on - strand, within Dsui_0495at 497.819 kb on - strand, within Dsui_0495at 497.837 kb on + strand, within Dsui_0495at 497.910 kb on - strand, within Dsui_0495at 497.910 kb on - strand, within Dsui_0495at 497.911 kb on - strand, within Dsui_0495at 498.033 kb on - strand, within Dsui_0495at 498.126 kb on + strand, within Dsui_0495at 498.134 kb on - strand, within Dsui_0495at 498.141 kb on + strand, within Dsui_0495at 498.144 kb on - strand, within Dsui_0495at 498.161 kb on + strand, within Dsui_0495at 498.168 kb on - strand, within Dsui_0495at 498.168 kb on - strand, within Dsui_0495at 498.417 kb on - strandat 498.766 kb on + strand, within Dsui_0496at 498.779 kb on - strand, within Dsui_0496at 498.786 kb on - strand, within Dsui_0496at 499.036 kb on + strand, within Dsui_0496at 499.108 kb on - strand, within Dsui_0496at 499.189 kb on - strand, within Dsui_0496at 499.204 kb on - strand, within Dsui_0496at 499.222 kb on - strand, within Dsui_0496at 499.338 kb on - strandat 499.401 kb on + strandat 499.514 kb on - strandat 499.557 kb on + strandat 499.562 kb on + strandat 499.572 kb on + strandat 499.789 kb on - strand, within Dsui_0497at 499.800 kb on - strand, within Dsui_0497at 499.823 kb on + strand, within Dsui_0497at 499.824 kb on - strand, within Dsui_0497at 499.896 kb on + strand, within Dsui_0497at 499.904 kb on - strand, within Dsui_0497at 500.026 kb on + strand, within Dsui_0497at 500.049 kb on + strand, within Dsui_0497at 500.077 kb on + strand, within Dsui_0497at 500.147 kb on + strand, within Dsui_0497at 500.164 kb on + strand, within Dsui_0497at 500.287 kb on - strandat 500.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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497,567 + -2.5
497,662 - Dsui_0495 0.19 -0.8
497,662 - Dsui_0495 0.19 -0.4
497,759 - Dsui_0495 0.30 -0.8
497,773 - Dsui_0495 0.32 +0.4
497,819 - Dsui_0495 0.37 -0.7
497,837 + Dsui_0495 0.39 +0.3
497,910 - Dsui_0495 0.47 -0.5
497,910 - Dsui_0495 0.47 +0.7
497,911 - Dsui_0495 0.47 -0.3
498,033 - Dsui_0495 0.60 -0.5
498,126 + Dsui_0495 0.70 +0.3
498,134 - Dsui_0495 0.71 -0.3
498,141 + Dsui_0495 0.72 -0.7
498,144 - Dsui_0495 0.72 -0.5
498,161 + Dsui_0495 0.74 -0.7
498,168 - Dsui_0495 0.75 -0.3
498,168 - Dsui_0495 0.75 -0.4
498,417 - -0.4
498,766 + Dsui_0496 0.39 +0.3
498,779 - Dsui_0496 0.40 -0.4
498,786 - Dsui_0496 0.41 -0.5
499,036 + Dsui_0496 0.67 -2.0
499,108 - Dsui_0496 0.74 -0.6
499,189 - Dsui_0496 0.82 +0.6
499,204 - Dsui_0496 0.84 -0.4
499,222 - Dsui_0496 0.86 -0.3
499,338 - +0.5
499,401 + -0.7
499,514 - +0.3
499,557 + +0.4
499,562 + -0.8
499,572 + +0.3
499,789 - Dsui_0497 0.34 -0.7
499,800 - Dsui_0497 0.35 +0.3
499,823 + Dsui_0497 0.38 -0.0
499,824 - Dsui_0497 0.38 -2.7
499,896 + Dsui_0497 0.46 +0.4
499,904 - Dsui_0497 0.47 -2.0
500,026 + Dsui_0497 0.61 +0.4
500,049 + Dsui_0497 0.64 -0.2
500,077 + Dsui_0497 0.67 -0.7
500,147 + Dsui_0497 0.75 -0.5
500,164 + Dsui_0497 0.77 +0.2
500,287 - -0.1
500,293 + -0.5

Or see this region's nucleotide sequence