Strain Fitness in Dechlorosoma suillum PS around Dsui_0432

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0430 and Dsui_0431 are separated by 12 nucleotidesDsui_0431 and Dsui_0432 are separated by 57 nucleotidesDsui_0432 and Dsui_0433 are separated by 93 nucleotides Dsui_0430: Dsui_0430 - ABC-type branched-chain amino acid transport system, periplasmic component, at 436,104 to 437,216 _0430 Dsui_0431: Dsui_0431 - putative permease, DMT superfamily, at 437,229 to 438,065 _0431 Dsui_0432: Dsui_0432 - hypothetical protein, at 438,123 to 439,199 _0432 Dsui_0433: Dsui_0433 - collagenase-like protease, at 439,293 to 440,606 _0433 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1at 437.164 kb on - strandat 437.217 kb on + strandat 437.220 kb on - strandat 437.225 kb on - strandat 437.225 kb on - strandat 437.415 kb on - strand, within Dsui_0431at 437.417 kb on - strand, within Dsui_0431at 437.422 kb on - strand, within Dsui_0431at 437.455 kb on + strand, within Dsui_0431at 437.455 kb on + strand, within Dsui_0431at 437.598 kb on - strand, within Dsui_0431at 437.611 kb on + strand, within Dsui_0431at 437.635 kb on - strand, within Dsui_0431at 437.637 kb on + strand, within Dsui_0431at 437.645 kb on - strand, within Dsui_0431at 437.702 kb on + strand, within Dsui_0431at 437.744 kb on + strandat 437.852 kb on - strand, within Dsui_0431at 437.856 kb on - strand, within Dsui_0431at 437.859 kb on + strandat 437.890 kb on - strand, within Dsui_0431at 437.932 kb on - strandat 437.948 kb on + strand, within Dsui_0431at 437.971 kb on - strand, within Dsui_0431at 438.026 kb on - strandat 438.044 kb on - strandat 438.060 kb on + strandat 438.260 kb on - strand, within Dsui_0432at 438.331 kb on + strand, within Dsui_0432at 438.390 kb on + strandat 438.506 kb on - strand, within Dsui_0432at 439.022 kb on + strand, within Dsui_0432at 439.157 kb on + strandat 439.203 kb on - strandat 439.233 kb on + strandat 439.242 kb on + strandat 439.299 kb on - strandat 439.540 kb on - strand, within Dsui_0433at 439.784 kb on - strand, within Dsui_0433at 439.814 kb on + strand, within Dsui_0433at 439.950 kb on - strandat 439.996 kb on - strand, within Dsui_0433at 440.076 kb on - strand, within Dsui_0433at 440.134 kb on - strand, within Dsui_0433

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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437,164 - -0.7
437,217 + -1.8
437,220 - -2.0
437,225 - -1.2
437,225 - +0.3
437,415 - Dsui_0431 0.22 -2.2
437,417 - Dsui_0431 0.22 -0.7
437,422 - Dsui_0431 0.23 +0.3
437,455 + Dsui_0431 0.27 -2.2
437,455 + Dsui_0431 0.27 -2.2
437,598 - Dsui_0431 0.44 -1.2
437,611 + Dsui_0431 0.46 -0.7
437,635 - Dsui_0431 0.49 -2.7
437,637 + Dsui_0431 0.49 -2.7
437,645 - Dsui_0431 0.50 -2.0
437,702 + Dsui_0431 0.57 +0.3
437,744 + +0.3
437,852 - Dsui_0431 0.74 +0.9
437,856 - Dsui_0431 0.75 -0.7
437,859 + +0.3
437,890 - Dsui_0431 0.79 -1.7
437,932 - -0.7
437,948 + Dsui_0431 0.86 -0.7
437,971 - Dsui_0431 0.89 -3.2
438,026 - +0.3
438,044 - -1.7
438,060 + -2.2
438,260 - Dsui_0432 0.13 -2.0
438,331 + Dsui_0432 0.19 +0.3
438,390 + +0.3
438,506 - Dsui_0432 0.36 -2.5
439,022 + Dsui_0432 0.83 -0.7
439,157 + -1.2
439,203 - -3.1
439,233 + -0.7
439,242 + -0.7
439,299 - -0.6
439,540 - Dsui_0433 0.19 -1.7
439,784 - Dsui_0433 0.37 +0.7
439,814 + Dsui_0433 0.40 -0.7
439,950 - -1.3
439,996 - Dsui_0433 0.54 -0.3
440,076 - Dsui_0433 0.60 -0.8
440,134 - Dsui_0433 0.64 -1.5

Or see this region's nucleotide sequence