Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0418 and Dsui_0419 overlap by 8 nucleotides Dsui_0419 and Dsui_0420 are separated by 141 nucleotides Dsui_0420 and Dsui_0421 are separated by 58 nucleotides
Dsui_0418: Dsui_0418 - putative Na+-dependent transporter, at 419,564 to 420,538
_0418
Dsui_0419: Dsui_0419 - hypothetical protein, at 420,531 to 421,073
_0419
Dsui_0420: Dsui_0420 - transcriptional regulator with HTH domain and aminotransferase domain, at 421,215 to 422,624
_0420
Dsui_0421: Dsui_0421 - carbonic anhydrase, at 422,683 to 424,119
_0421
Position (kb)
421
422
423 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 420.222 kb on + strand at 420.270 kb on + strand, within Dsui_0418 at 420.278 kb on - strand, within Dsui_0418 at 420.283 kb on - strand, within Dsui_0418 at 420.508 kb on - strand at 420.516 kb on + strand at 420.548 kb on + strand at 420.760 kb on - strand, within Dsui_0419 at 420.812 kb on + strand at 420.972 kb on - strand, within Dsui_0419 at 421.013 kb on - strand, within Dsui_0419 at 421.048 kb on + strand at 421.055 kb on - strand at 421.056 kb on - strand at 421.068 kb on + strand at 421.068 kb on + strand at 421.076 kb on - strand at 421.090 kb on - strand at 421.178 kb on - strand at 421.196 kb on - strand at 421.216 kb on + strand at 421.244 kb on + strand at 421.251 kb on - strand at 421.671 kb on + strand, within Dsui_0420 at 421.671 kb on + strand, within Dsui_0420 at 421.671 kb on + strand, within Dsui_0420 at 421.671 kb on + strand, within Dsui_0420 at 421.674 kb on - strand, within Dsui_0420 at 421.679 kb on - strand at 421.729 kb on - strand at 421.777 kb on + strand, within Dsui_0420 at 421.851 kb on - strand, within Dsui_0420 at 421.876 kb on + strand, within Dsui_0420 at 421.958 kb on - strand at 421.958 kb on - strand, within Dsui_0420 at 422.117 kb on + strand, within Dsui_0420 at 422.122 kb on + strand, within Dsui_0420 at 422.130 kb on - strand, within Dsui_0420 at 422.182 kb on + strand, within Dsui_0420 at 422.234 kb on - strand, within Dsui_0420 at 422.615 kb on - strand at 422.616 kb on - strand at 422.616 kb on - strand at 422.779 kb on + strand at 422.963 kb on - strand, within Dsui_0421 at 422.964 kb on - strand at 423.122 kb on - strand, within Dsui_0421 at 423.331 kb on + strand at 423.369 kb on + strand, within Dsui_0421 at 423.378 kb on + strand, within Dsui_0421 at 423.379 kb on + strand, within Dsui_0421 at 423.463 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 420,222 + +0.4 420,270 + Dsui_0418 0.72 -1.6 420,278 - Dsui_0418 0.73 -0.6 420,283 - Dsui_0418 0.74 -0.6 420,508 - -2.5 420,516 + -0.6 420,548 + +0.4 420,760 - Dsui_0419 0.42 -1.6 420,812 + -0.6 420,972 - Dsui_0419 0.81 -2.6 421,013 - Dsui_0419 0.89 -0.6 421,048 + -3.0 421,055 - -1.6 421,056 - -1.6 421,068 + -1.2 421,068 + -2.0 421,076 - +0.4 421,090 - -0.6 421,178 - +0.4 421,196 - +0.4 421,216 + -0.6 421,244 + -0.3 421,251 - -0.6 421,671 + Dsui_0420 0.32 +0.1 421,671 + Dsui_0420 0.32 -0.6 421,671 + Dsui_0420 0.32 -0.7 421,671 + Dsui_0420 0.32 -0.1 421,674 - Dsui_0420 0.33 -2.2 421,679 - -1.2 421,729 - +0.4 421,777 + Dsui_0420 0.40 -0.8 421,851 - Dsui_0420 0.45 -2.0 421,876 + Dsui_0420 0.47 -0.5 421,958 - +0.4 421,958 - Dsui_0420 0.53 -1.2 422,117 + Dsui_0420 0.64 -1.0 422,122 + Dsui_0420 0.64 -0.8 422,130 - Dsui_0420 0.65 -1.2 422,182 + Dsui_0420 0.69 -0.2 422,234 - Dsui_0420 0.72 -0.6 422,615 - +0.4 422,616 - +0.4 422,616 - +0.4 422,779 + -1.6 422,963 - Dsui_0421 0.19 +0.4 422,964 - +0.4 423,122 - Dsui_0421 0.31 -1.2 423,331 + -1.2 423,369 + Dsui_0421 0.48 -2.5 423,378 + Dsui_0421 0.48 -1.2 423,379 + Dsui_0421 0.48 -1.6 423,463 + +0.4
Or see this region's nucleotide sequence