Strain Fitness in Dechlorosoma suillum PS around Dsui_0420

Experiment: ALP with Cisplatin 0.0009 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0418 and Dsui_0419 overlap by 8 nucleotidesDsui_0419 and Dsui_0420 are separated by 141 nucleotidesDsui_0420 and Dsui_0421 are separated by 58 nucleotides Dsui_0418: Dsui_0418 - putative Na+-dependent transporter, at 419,564 to 420,538 _0418 Dsui_0419: Dsui_0419 - hypothetical protein, at 420,531 to 421,073 _0419 Dsui_0420: Dsui_0420 - transcriptional regulator with HTH domain and aminotransferase domain, at 421,215 to 422,624 _0420 Dsui_0421: Dsui_0421 - carbonic anhydrase, at 422,683 to 424,119 _0421 Position (kb) 421 422 423Strain fitness (log2 ratio) -3 -2 -1 0 1at 420.222 kb on + strandat 420.270 kb on + strand, within Dsui_0418at 420.278 kb on - strand, within Dsui_0418at 420.283 kb on - strand, within Dsui_0418at 420.508 kb on - strandat 420.516 kb on + strandat 420.548 kb on + strandat 420.760 kb on - strand, within Dsui_0419at 420.812 kb on + strandat 420.972 kb on - strand, within Dsui_0419at 421.013 kb on - strand, within Dsui_0419at 421.048 kb on + strandat 421.055 kb on - strandat 421.056 kb on - strandat 421.068 kb on + strandat 421.068 kb on + strandat 421.076 kb on - strandat 421.090 kb on - strandat 421.178 kb on - strandat 421.196 kb on - strandat 421.216 kb on + strandat 421.244 kb on + strandat 421.251 kb on - strandat 421.671 kb on + strand, within Dsui_0420at 421.671 kb on + strand, within Dsui_0420at 421.671 kb on + strand, within Dsui_0420at 421.671 kb on + strand, within Dsui_0420at 421.674 kb on - strand, within Dsui_0420at 421.679 kb on - strandat 421.729 kb on - strandat 421.777 kb on + strand, within Dsui_0420at 421.851 kb on - strand, within Dsui_0420at 421.876 kb on + strand, within Dsui_0420at 421.958 kb on - strandat 421.958 kb on - strand, within Dsui_0420at 422.117 kb on + strand, within Dsui_0420at 422.122 kb on + strand, within Dsui_0420at 422.130 kb on - strand, within Dsui_0420at 422.182 kb on + strand, within Dsui_0420at 422.234 kb on - strand, within Dsui_0420at 422.615 kb on - strandat 422.616 kb on - strandat 422.616 kb on - strandat 422.779 kb on + strandat 422.963 kb on - strand, within Dsui_0421at 422.964 kb on - strandat 423.122 kb on - strand, within Dsui_0421at 423.331 kb on + strandat 423.369 kb on + strand, within Dsui_0421at 423.378 kb on + strand, within Dsui_0421at 423.379 kb on + strand, within Dsui_0421at 423.463 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
remove
420,222 + +0.4
420,270 + Dsui_0418 0.72 -1.6
420,278 - Dsui_0418 0.73 -0.6
420,283 - Dsui_0418 0.74 -0.6
420,508 - -2.5
420,516 + -0.6
420,548 + +0.4
420,760 - Dsui_0419 0.42 -1.6
420,812 + -0.6
420,972 - Dsui_0419 0.81 -2.6
421,013 - Dsui_0419 0.89 -0.6
421,048 + -3.0
421,055 - -1.6
421,056 - -1.6
421,068 + -1.2
421,068 + -2.0
421,076 - +0.4
421,090 - -0.6
421,178 - +0.4
421,196 - +0.4
421,216 + -0.6
421,244 + -0.3
421,251 - -0.6
421,671 + Dsui_0420 0.32 +0.1
421,671 + Dsui_0420 0.32 -0.6
421,671 + Dsui_0420 0.32 -0.7
421,671 + Dsui_0420 0.32 -0.1
421,674 - Dsui_0420 0.33 -2.2
421,679 - -1.2
421,729 - +0.4
421,777 + Dsui_0420 0.40 -0.8
421,851 - Dsui_0420 0.45 -2.0
421,876 + Dsui_0420 0.47 -0.5
421,958 - +0.4
421,958 - Dsui_0420 0.53 -1.2
422,117 + Dsui_0420 0.64 -1.0
422,122 + Dsui_0420 0.64 -0.8
422,130 - Dsui_0420 0.65 -1.2
422,182 + Dsui_0420 0.69 -0.2
422,234 - Dsui_0420 0.72 -0.6
422,615 - +0.4
422,616 - +0.4
422,616 - +0.4
422,779 + -1.6
422,963 - Dsui_0421 0.19 +0.4
422,964 - +0.4
423,122 - Dsui_0421 0.31 -1.2
423,331 + -1.2
423,369 + Dsui_0421 0.48 -2.5
423,378 + Dsui_0421 0.48 -1.2
423,379 + Dsui_0421 0.48 -1.6
423,463 + +0.4

Or see this region's nucleotide sequence