Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0417 and Dsui_0418 are separated by 34 nucleotides Dsui_0418 and Dsui_0419 overlap by 8 nucleotides Dsui_0419 and Dsui_0420 are separated by 141 nucleotides
Dsui_0417: Dsui_0417 - gamma-glutamyltransferase, at 417,940 to 419,529
_0417
Dsui_0418: Dsui_0418 - putative Na+-dependent transporter, at 419,564 to 420,538
_0418
Dsui_0419: Dsui_0419 - hypothetical protein, at 420,531 to 421,073
_0419
Dsui_0420: Dsui_0420 - transcriptional regulator with HTH domain and aminotransferase domain, at 421,215 to 422,624
_0420
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 418.844 kb on + strand at 418.919 kb on + strand, within Dsui_0417 at 419.045 kb on + strand at 419.123 kb on + strand, within Dsui_0417 at 419.131 kb on - strand at 419.131 kb on - strand at 419.172 kb on - strand, within Dsui_0417 at 419.324 kb on + strand, within Dsui_0417 at 419.327 kb on - strand at 419.489 kb on + strand at 419.533 kb on - strand at 419.593 kb on + strand at 419.782 kb on - strand, within Dsui_0418 at 419.824 kb on - strand at 419.868 kb on + strand, within Dsui_0418 at 419.922 kb on + strand at 419.935 kb on - strand, within Dsui_0418 at 419.966 kb on - strand, within Dsui_0418 at 419.997 kb on - strand, within Dsui_0418 at 420.004 kb on - strand, within Dsui_0418 at 420.017 kb on - strand at 420.083 kb on - strand, within Dsui_0418 at 420.098 kb on + strand, within Dsui_0418 at 420.195 kb on - strand, within Dsui_0418 at 420.195 kb on - strand at 420.222 kb on + strand at 420.270 kb on + strand, within Dsui_0418 at 420.278 kb on - strand, within Dsui_0418 at 420.283 kb on - strand, within Dsui_0418 at 420.508 kb on - strand at 420.516 kb on + strand at 420.548 kb on + strand at 420.760 kb on - strand, within Dsui_0419 at 420.812 kb on + strand at 420.972 kb on - strand, within Dsui_0419 at 421.013 kb on - strand, within Dsui_0419 at 421.048 kb on + strand at 421.055 kb on - strand at 421.056 kb on - strand at 421.068 kb on + strand at 421.068 kb on + strand at 421.076 kb on - strand at 421.090 kb on - strand at 421.178 kb on - strand at 421.196 kb on - strand at 421.216 kb on + strand at 421.244 kb on + strand at 421.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 418,844 + -1.2 418,919 + Dsui_0417 0.62 -0.6 419,045 + +0.4 419,123 + Dsui_0417 0.74 +0.4 419,131 - -0.6 419,131 - -0.6 419,172 - Dsui_0417 0.77 -1.2 419,324 + Dsui_0417 0.87 +0.4 419,327 - +0.4 419,489 + -1.2 419,533 - -0.6 419,593 + +0.4 419,782 - Dsui_0418 0.22 -0.6 419,824 - +0.4 419,868 + Dsui_0418 0.31 -0.6 419,922 + +0.4 419,935 - Dsui_0418 0.38 -2.0 419,966 - Dsui_0418 0.41 -2.2 419,997 - Dsui_0418 0.44 -1.2 420,004 - Dsui_0418 0.45 -2.0 420,017 - +0.4 420,083 - Dsui_0418 0.53 -1.6 420,098 + Dsui_0418 0.55 -0.6 420,195 - Dsui_0418 0.65 -2.2 420,195 - -0.6 420,222 + +0.4 420,270 + Dsui_0418 0.72 -1.6 420,278 - Dsui_0418 0.73 -0.6 420,283 - Dsui_0418 0.74 -0.6 420,508 - -2.5 420,516 + -0.6 420,548 + +0.4 420,760 - Dsui_0419 0.42 -1.6 420,812 + -0.6 420,972 - Dsui_0419 0.81 -2.6 421,013 - Dsui_0419 0.89 -0.6 421,048 + -3.0 421,055 - -1.6 421,056 - -1.6 421,068 + -1.2 421,068 + -2.0 421,076 - +0.4 421,090 - -0.6 421,178 - +0.4 421,196 - +0.4 421,216 + -0.6 421,244 + -0.3 421,251 - -0.6
Or see this region's nucleotide sequence