Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0391 and Dsui_0392 are separated by 96 nucleotides Dsui_0392 and Dsui_0393 are separated by 73 nucleotides Dsui_0393 and Dsui_0394 are separated by 65 nucleotides
Dsui_0391: Dsui_0391 - Protein of unknown function (DUF3426), at 389,887 to 390,879
_0391
Dsui_0392: Dsui_0392 - diacylglycerol kinase, at 390,976 to 391,362
_0392
Dsui_0393: Dsui_0393 - glycosyltransferase, at 391,436 to 392,680
_0393
Dsui_0394: Dsui_0394 - sugar kinase, ribokinase, at 392,746 to 393,681
_0394
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.905 kb on + strand at 390.908 kb on - strand at 390.913 kb on - strand at 390.961 kb on + strand at 390.966 kb on - strand at 391.003 kb on - strand at 391.020 kb on - strand, within Dsui_0392 at 391.030 kb on + strand, within Dsui_0392 at 391.047 kb on + strand, within Dsui_0392 at 391.050 kb on - strand at 391.055 kb on - strand, within Dsui_0392 at 391.133 kb on - strand, within Dsui_0392 at 391.166 kb on + strand, within Dsui_0392 at 391.170 kb on + strand, within Dsui_0392 at 391.179 kb on - strand, within Dsui_0392 at 391.204 kb on + strand at 391.343 kb on + strand at 391.483 kb on - strand at 391.562 kb on + strand at 391.564 kb on - strand, within Dsui_0393 at 391.724 kb on - strand, within Dsui_0393 at 391.748 kb on + strand at 391.778 kb on + strand, within Dsui_0393 at 391.799 kb on + strand, within Dsui_0393 at 391.807 kb on - strand, within Dsui_0393 at 391.903 kb on - strand at 391.903 kb on - strand at 391.913 kb on - strand at 391.938 kb on - strand, within Dsui_0393 at 392.061 kb on - strand, within Dsui_0393 at 392.081 kb on - strand at 392.099 kb on - strand at 392.125 kb on + strand, within Dsui_0393 at 392.194 kb on - strand at 392.237 kb on + strand, within Dsui_0393 at 392.378 kb on - strand at 392.396 kb on - strand at 392.437 kb on + strand at 392.445 kb on - strand, within Dsui_0393 at 392.518 kb on + strand, within Dsui_0393 at 392.680 kb on + strand at 392.705 kb on + strand at 392.748 kb on - strand at 392.765 kb on - strand at 392.821 kb on - strand at 392.912 kb on + strand, within Dsui_0394 at 392.922 kb on + strand, within Dsui_0394 at 393.001 kb on - strand at 393.001 kb on - strand at 393.001 kb on - strand at 393.033 kb on + strand, within Dsui_0394 at 393.041 kb on - strand at 393.051 kb on + strand, within Dsui_0394 at 393.054 kb on + strand, within Dsui_0394 at 393.057 kb on - strand at 393.103 kb on + strand, within Dsui_0394 at 393.110 kb on + strand, within Dsui_0394 at 393.128 kb on - strand, within Dsui_0394 at 393.207 kb on - strand, within Dsui_0394 at 393.252 kb on - strand at 393.277 kb on + strand, within Dsui_0394 at 393.299 kb on - strand, within Dsui_0394 at 393.319 kb on - strand, within Dsui_0394 at 393.423 kb on - strand, within Dsui_0394 at 393.498 kb on - strand at 393.514 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 390,905 + -0.5 390,908 - +0.3 390,913 - -0.7 390,961 + -0.5 390,966 - -1.2 391,003 - -0.7 391,020 - Dsui_0392 0.11 -2.5 391,030 + Dsui_0392 0.14 -1.2 391,047 + Dsui_0392 0.18 +0.3 391,050 - -0.7 391,055 - Dsui_0392 0.20 +0.3 391,133 - Dsui_0392 0.41 -0.7 391,166 + Dsui_0392 0.49 -1.2 391,170 + Dsui_0392 0.50 -2.5 391,179 - Dsui_0392 0.52 +0.3 391,204 + +0.3 391,343 + -0.7 391,483 - -0.7 391,562 + -0.7 391,564 - Dsui_0393 0.10 -0.7 391,724 - Dsui_0393 0.23 -1.7 391,748 + +0.3 391,778 + Dsui_0393 0.27 +0.3 391,799 + Dsui_0393 0.29 -2.0 391,807 - Dsui_0393 0.30 +0.3 391,903 - +0.3 391,903 - +0.3 391,913 - +0.3 391,938 - Dsui_0393 0.40 -1.2 392,061 - Dsui_0393 0.50 -3.0 392,081 - +0.3 392,099 - +0.3 392,125 + Dsui_0393 0.55 -1.7 392,194 - +0.3 392,237 + Dsui_0393 0.64 -0.7 392,378 - +0.3 392,396 - +0.3 392,437 + +0.3 392,445 - Dsui_0393 0.81 -0.7 392,518 + Dsui_0393 0.87 -1.7 392,680 + -1.7 392,705 + -0.5 392,748 - +0.3 392,765 - -0.7 392,821 - -2.0 392,912 + Dsui_0394 0.18 -1.3 392,922 + Dsui_0394 0.19 -1.2 393,001 - +0.3 393,001 - +0.3 393,001 - +0.3 393,033 + Dsui_0394 0.31 -0.8 393,041 - -0.7 393,051 + Dsui_0394 0.33 -0.2 393,054 + Dsui_0394 0.33 -1.4 393,057 - +0.3 393,103 + Dsui_0394 0.38 -1.0 393,110 + Dsui_0394 0.39 -2.4 393,128 - Dsui_0394 0.41 -1.7 393,207 - Dsui_0394 0.49 -1.2 393,252 - +0.3 393,277 + Dsui_0394 0.57 -1.4 393,299 - Dsui_0394 0.59 -1.2 393,319 - Dsui_0394 0.61 +0.3 393,423 - Dsui_0394 0.72 +0.3 393,498 - -0.7 393,514 + Dsui_0394 0.82 -0.6 393,519 + Dsui_0394 0.83 -1.0 393,519 + Dsui_0394 0.83 -1.5
Or see this region's nucleotide sequence