Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0300 and Dsui_0301 are separated by 31 nucleotides Dsui_0301 and Dsui_0302 are separated by 160 nucleotides Dsui_0302 and Dsui_0303 are separated by 7 nucleotides Dsui_0303 and Dsui_0304 are separated by 36 nucleotides
Dsui_0300: Dsui_0300 - response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 300,996 to 302,621
_0300
Dsui_0301: Dsui_0301 - histidine kinase, at 302,653 to 303,342
_0301
Dsui_0302: Dsui_0302 - UbiD family decarboxylase, at 303,503 to 304,978
_0302
Dsui_0303: Dsui_0303 - 4-hydroxybenzoate polyprenyl transferase, proteobacterial, at 304,986 to 305,897
_0303
Dsui_0304: Dsui_0304 - hypothetical protein, at 305,934 to 306,182
_0304
Position (kb) 303
304
305 Strain fitness (log2 ratio) -1
0
1 at 302.512 kb on - strand at 302.516 kb on + strand at 302.524 kb on - strand at 302.538 kb on + strand at 302.649 kb on - strand at 302.651 kb on + strand at 302.662 kb on + strand at 302.882 kb on - strand, within Dsui_0301 at 302.924 kb on + strand at 302.987 kb on + strand, within Dsui_0301 at 303.007 kb on + strand, within Dsui_0301 at 303.061 kb on - strand, within Dsui_0301 at 303.315 kb on + strand at 303.323 kb on - strand at 303.433 kb on - strand at 303.516 kb on - strand at 305.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 302,512 - -0.5 302,516 + +0.4 302,524 - +0.1 302,538 + +0.4 302,649 - -0.6 302,651 + -1.2 302,662 + -1.6 302,882 - Dsui_0301 0.33 -0.4 302,924 + +0.4 302,987 + Dsui_0301 0.48 -0.6 303,007 + Dsui_0301 0.51 -1.6 303,061 - Dsui_0301 0.59 -1.0 303,315 + +0.4 303,323 - -0.7 303,433 - -1.2 303,516 - +0.4 305,033 - -0.7
Or see this region's nucleotide sequence