Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0275 and Dsui_0276 overlap by 4 nucleotides Dsui_0276 and Dsui_0277 are separated by 9 nucleotides Dsui_0277 and Dsui_0278 are separated by 10 nucleotides Dsui_0278 and Dsui_0279 are separated by 10 nucleotides
Dsui_0275: Dsui_0275 - conserved hypothetical protein, proteobacterial, at 276,530 to 277,366
_0275
Dsui_0276: Dsui_0276 - hypothetical protein, at 277,363 to 277,503
_0276
Dsui_0277: Dsui_0277 - K+-transporting ATPase, C subunit, at 277,513 to 278,088
_0277
Dsui_0278: Dsui_0278 - K+-transporting ATPase, B subunit, at 278,099 to 280,177
_0278
Dsui_0279: Dsui_0279 - K+-transporting ATPase, KdpA, at 280,188 to 281,996
_0279
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 277.161 kb on - strand, within Dsui_0275 at 277.193 kb on + strand at 277.222 kb on + strand at 277.225 kb on - strand at 277.225 kb on - strand, within Dsui_0275 at 277.263 kb on - strand at 277.280 kb on + strand, within Dsui_0275 at 277.350 kb on - strand at 277.561 kb on - strand at 277.595 kb on + strand at 277.711 kb on + strand at 277.763 kb on + strand at 277.819 kb on - strand, within Dsui_0277 at 277.866 kb on - strand, within Dsui_0277 at 277.967 kb on + strand, within Dsui_0277 at 278.021 kb on - strand at 278.049 kb on + strand at 278.062 kb on - strand at 278.102 kb on + strand at 278.105 kb on - strand at 278.107 kb on + strand at 278.161 kb on - strand at 278.163 kb on + strand at 278.182 kb on - strand at 278.387 kb on + strand at 278.387 kb on + strand, within Dsui_0278 at 278.387 kb on + strand at 278.417 kb on + strand, within Dsui_0278 at 278.511 kb on - strand, within Dsui_0278 at 278.548 kb on - strand, within Dsui_0278 at 278.674 kb on - strand at 278.758 kb on - strand, within Dsui_0278 at 278.872 kb on - strand at 278.933 kb on + strand, within Dsui_0278 at 279.017 kb on + strand, within Dsui_0278 at 279.099 kb on - strand, within Dsui_0278 at 279.498 kb on - strand, within Dsui_0278 at 279.732 kb on + strand, within Dsui_0278 at 279.810 kb on - strand, within Dsui_0278 at 279.819 kb on + strand at 279.884 kb on + strand, within Dsui_0278 at 279.892 kb on - strand, within Dsui_0278 at 279.972 kb on - strand at 279.972 kb on - strand at 280.048 kb on - strand at 280.192 kb on - strand at 280.235 kb on - strand at 280.414 kb on + strand at 280.418 kb on + strand, within Dsui_0279 at 280.529 kb on - strand, within Dsui_0279 at 280.572 kb on + strand at 280.811 kb on - strand, within Dsui_0279 at 280.811 kb on - strand, within Dsui_0279 at 280.874 kb on + strand at 280.883 kb on - strand, within Dsui_0279 at 280.952 kb on - strand, within Dsui_0279
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 277,161 - Dsui_0275 0.75 +0.4 277,193 + +0.4 277,222 + -0.6 277,225 - +0.4 277,225 - Dsui_0275 0.83 -1.2 277,263 - +0.4 277,280 + Dsui_0275 0.90 +0.4 277,350 - +0.4 277,561 - +0.4 277,595 + +0.4 277,711 + +0.4 277,763 + +0.4 277,819 - Dsui_0277 0.53 +0.4 277,866 - Dsui_0277 0.61 -0.6 277,967 + Dsui_0277 0.79 -1.2 278,021 - -1.2 278,049 + +0.4 278,062 - -0.6 278,102 + +0.4 278,105 - +0.4 278,107 + +0.4 278,161 - -1.2 278,163 + -0.6 278,182 - +0.4 278,387 + +0.4 278,387 + Dsui_0278 0.14 -1.2 278,387 + +0.4 278,417 + Dsui_0278 0.15 -0.6 278,511 - Dsui_0278 0.20 -0.6 278,548 - Dsui_0278 0.22 +0.4 278,674 - +0.4 278,758 - Dsui_0278 0.32 -1.2 278,872 - -0.6 278,933 + Dsui_0278 0.40 -0.6 279,017 + Dsui_0278 0.44 +0.4 279,099 - Dsui_0278 0.48 +0.4 279,498 - Dsui_0278 0.67 -1.9 279,732 + Dsui_0278 0.79 +0.4 279,810 - Dsui_0278 0.82 +0.4 279,819 + -0.6 279,884 + Dsui_0278 0.86 -1.6 279,892 - Dsui_0278 0.86 -2.9 279,972 - -0.6 279,972 - +0.4 280,048 - -1.6 280,192 - +0.4 280,235 - +0.4 280,414 + +0.4 280,418 + Dsui_0279 0.13 -0.6 280,529 - Dsui_0279 0.19 -1.6 280,572 + +0.4 280,811 - Dsui_0279 0.34 -1.2 280,811 - Dsui_0279 0.34 -1.2 280,874 + +0.4 280,883 - Dsui_0279 0.38 -0.6 280,952 - Dsui_0279 0.42 -0.6
Or see this region's nucleotide sequence