Strain Fitness in Dechlorosoma suillum PS around Dsui_0187

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0186 and Dsui_0187 are separated by 16 nucleotidesDsui_0187 and Dsui_0188 are separated by 28 nucleotidesDsui_0188 and Dsui_0189 are separated by 181 nucleotides Dsui_0186: Dsui_0186 - DNA/RNA helicase, superfamily II, SNF2 family, at 185,870 to 188,398 _0186 Dsui_0187: Dsui_0187 - hypothetical protein, at 188,415 to 189,269 _0187 Dsui_0188: Dsui_0188 - hypothetical protein, at 189,298 to 189,816 _0188 Dsui_0189: Dsui_0189 - holliday junction resolvase, at 189,998 to 190,438 _0189 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1at 187.462 kb on + strand, within Dsui_0186at 187.506 kb on - strand, within Dsui_0186at 187.507 kb on + strand, within Dsui_0186at 187.610 kb on + strand, within Dsui_0186at 187.710 kb on + strand, within Dsui_0186at 187.710 kb on + strand, within Dsui_0186at 187.752 kb on - strand, within Dsui_0186at 187.757 kb on + strand, within Dsui_0186at 187.760 kb on - strand, within Dsui_0186at 187.780 kb on + strand, within Dsui_0186at 187.788 kb on - strand, within Dsui_0186at 188.024 kb on - strand, within Dsui_0186at 188.047 kb on - strand, within Dsui_0186at 188.149 kb on - strandat 188.294 kb on + strandat 188.391 kb on - strandat 188.410 kb on - strandat 188.421 kb on - strandat 188.463 kb on + strandat 188.463 kb on + strandat 188.481 kb on - strandat 188.673 kb on + strand, within Dsui_0187at 188.707 kb on - strand, within Dsui_0187at 188.731 kb on - strand, within Dsui_0187at 188.859 kb on - strand, within Dsui_0187at 188.936 kb on - strand, within Dsui_0187at 188.978 kb on - strand, within Dsui_0187at 188.986 kb on + strand, within Dsui_0187at 189.032 kb on - strand, within Dsui_0187at 189.071 kb on + strand, within Dsui_0187at 189.114 kb on + strand, within Dsui_0187at 189.138 kb on - strand, within Dsui_0187at 189.316 kb on + strandat 189.539 kb on + strandat 189.573 kb on + strand, within Dsui_0188at 189.596 kb on + strand, within Dsui_0188at 189.741 kb on - strand, within Dsui_0188at 189.745 kb on - strand, within Dsui_0188at 189.823 kb on + strandat 189.823 kb on + strandat 189.902 kb on - strandat 189.966 kb on + strandat 189.977 kb on + strandat 190.057 kb on - strand, within Dsui_0189at 190.101 kb on - strand, within Dsui_0189at 190.153 kb on + strand, within Dsui_0189at 190.153 kb on + strand, within Dsui_0189at 190.153 kb on + strand, within Dsui_0189at 190.161 kb on - strand, within Dsui_0189at 190.161 kb on - strand, within Dsui_0189at 190.198 kb on + strand, within Dsui_0189at 190.198 kb on + strand, within Dsui_0189at 190.212 kb on - strand, within Dsui_0189

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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187,462 + Dsui_0186 0.63 +0.3
187,506 - Dsui_0186 0.65 +0.3
187,507 + Dsui_0186 0.65 +0.3
187,610 + Dsui_0186 0.69 +0.3
187,710 + Dsui_0186 0.73 +0.3
187,710 + Dsui_0186 0.73 +0.3
187,752 - Dsui_0186 0.74 -2.0
187,757 + Dsui_0186 0.75 +0.3
187,760 - Dsui_0186 0.75 -1.2
187,780 + Dsui_0186 0.76 +0.3
187,788 - Dsui_0186 0.76 -0.7
188,024 - Dsui_0186 0.85 +0.3
188,047 - Dsui_0186 0.86 -1.3
188,149 - +0.3
188,294 + -0.7
188,391 - +0.3
188,410 - -1.3
188,421 - -1.3
188,463 + +0.3
188,463 + +0.3
188,481 - +0.3
188,673 + Dsui_0187 0.30 -1.3
188,707 - Dsui_0187 0.34 +0.3
188,731 - Dsui_0187 0.37 -0.7
188,859 - Dsui_0187 0.52 +0.3
188,936 - Dsui_0187 0.61 +0.3
188,978 - Dsui_0187 0.66 -1.3
188,986 + Dsui_0187 0.67 +0.3
189,032 - Dsui_0187 0.72 -0.7
189,071 + Dsui_0187 0.77 -0.7
189,114 + Dsui_0187 0.82 -2.0
189,138 - Dsui_0187 0.85 -0.7
189,316 + +0.3
189,539 + +0.3
189,573 + Dsui_0188 0.53 -1.7
189,596 + Dsui_0188 0.57 -1.3
189,741 - Dsui_0188 0.85 +0.3
189,745 - Dsui_0188 0.86 -0.7
189,823 + +0.3
189,823 + +0.3
189,902 - -1.3
189,966 + +0.3
189,977 + +0.3
190,057 - Dsui_0189 0.13 -0.7
190,101 - Dsui_0189 0.23 +0.3
190,153 + Dsui_0189 0.35 +0.3
190,153 + Dsui_0189 0.35 -1.3
190,153 + Dsui_0189 0.35 -0.7
190,161 - Dsui_0189 0.37 -0.7
190,161 - Dsui_0189 0.37 +0.3
190,198 + Dsui_0189 0.45 -0.7
190,198 + Dsui_0189 0.45 +0.3
190,212 - Dsui_0189 0.49 -1.3

Or see this region's nucleotide sequence