Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0131 and Dsui_0132 are separated by 101 nucleotides Dsui_0132 and Dsui_0133 are separated by 145 nucleotides
Dsui_0131: Dsui_0131 - phosphoenolpyruvate carboxykinase (GTP), at 131,185 to 133,044
_0131
Dsui_0132: Dsui_0132 - aspartate/tyrosine/aromatic aminotransferase, at 133,146 to 134,303
_0132
Dsui_0133: Dsui_0133 - hypothetical protein, at 134,449 to 135,519
_0133
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 132.247 kb on + strand, within Dsui_0131 at 132.247 kb on + strand, within Dsui_0131 at 132.255 kb on - strand, within Dsui_0131 at 132.275 kb on + strand, within Dsui_0131 at 132.278 kb on - strand, within Dsui_0131 at 132.283 kb on - strand, within Dsui_0131 at 132.335 kb on - strand, within Dsui_0131 at 132.353 kb on - strand, within Dsui_0131 at 132.485 kb on + strand, within Dsui_0131 at 132.526 kb on + strand, within Dsui_0131 at 132.532 kb on - strand, within Dsui_0131 at 132.539 kb on + strand, within Dsui_0131 at 132.839 kb on - strand, within Dsui_0131 at 133.024 kb on - strand at 133.026 kb on + strand at 133.026 kb on + strand at 133.034 kb on - strand at 133.107 kb on + strand at 133.114 kb on + strand at 133.122 kb on - strand at 133.122 kb on - strand at 133.200 kb on - strand at 133.257 kb on - strand at 133.339 kb on + strand, within Dsui_0132 at 133.339 kb on + strand, within Dsui_0132 at 133.344 kb on + strand, within Dsui_0132 at 133.352 kb on - strand, within Dsui_0132 at 133.353 kb on - strand, within Dsui_0132 at 133.467 kb on - strand, within Dsui_0132 at 133.472 kb on - strand, within Dsui_0132 at 133.554 kb on - strand at 133.622 kb on + strand, within Dsui_0132 at 133.622 kb on + strand, within Dsui_0132 at 133.649 kb on + strand, within Dsui_0132 at 133.650 kb on + strand, within Dsui_0132 at 133.684 kb on + strand, within Dsui_0132 at 133.685 kb on + strand, within Dsui_0132 at 133.822 kb on - strand, within Dsui_0132 at 133.835 kb on - strand, within Dsui_0132 at 133.840 kb on - strand, within Dsui_0132 at 133.885 kb on + strand at 133.895 kb on - strand, within Dsui_0132 at 133.895 kb on - strand, within Dsui_0132 at 133.961 kb on - strand, within Dsui_0132 at 133.998 kb on - strand, within Dsui_0132 at 134.049 kb on - strand at 134.095 kb on - strand, within Dsui_0132 at 134.106 kb on - strand, within Dsui_0132 at 134.140 kb on + strand, within Dsui_0132 at 134.243 kb on + strand at 134.264 kb on + strand at 134.305 kb on - strand at 134.319 kb on + strand at 134.352 kb on - strand at 134.412 kb on + strand at 134.412 kb on + strand at 134.414 kb on - strand at 134.514 kb on - strand at 134.587 kb on + strand, within Dsui_0133 at 134.590 kb on - strand, within Dsui_0133 at 134.626 kb on - strand, within Dsui_0133
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 132,247 + Dsui_0131 0.57 -0.4 132,247 + Dsui_0131 0.57 +0.5 132,255 - Dsui_0131 0.58 +0.4 132,275 + Dsui_0131 0.59 -0.7 132,278 - Dsui_0131 0.59 +0.4 132,283 - Dsui_0131 0.59 +0.4 132,335 - Dsui_0131 0.62 +0.4 132,353 - Dsui_0131 0.63 +0.4 132,485 + Dsui_0131 0.70 -0.7 132,526 + Dsui_0131 0.72 -1.4 132,532 - Dsui_0131 0.72 -1.6 132,539 + Dsui_0131 0.73 -0.6 132,839 - Dsui_0131 0.89 +0.4 133,024 - -1.2 133,026 + -0.7 133,026 + -0.4 133,034 - +0.4 133,107 + +0.4 133,114 + -1.0 133,122 - +0.4 133,122 - -1.2 133,200 - +0.4 133,257 - -2.0 133,339 + Dsui_0132 0.17 -1.0 133,339 + Dsui_0132 0.17 -1.0 133,344 + Dsui_0132 0.17 -1.6 133,352 - Dsui_0132 0.18 +0.4 133,353 - Dsui_0132 0.18 -1.6 133,467 - Dsui_0132 0.28 -2.2 133,472 - Dsui_0132 0.28 -2.4 133,554 - +0.4 133,622 + Dsui_0132 0.41 -1.6 133,622 + Dsui_0132 0.41 -1.0 133,649 + Dsui_0132 0.43 -2.0 133,650 + Dsui_0132 0.44 -0.8 133,684 + Dsui_0132 0.46 -1.5 133,685 + Dsui_0132 0.47 -1.7 133,822 - Dsui_0132 0.58 -1.6 133,835 - Dsui_0132 0.59 -1.2 133,840 - Dsui_0132 0.60 -0.2 133,885 + +0.4 133,895 - Dsui_0132 0.65 +0.4 133,895 - Dsui_0132 0.65 -0.6 133,961 - Dsui_0132 0.70 +0.4 133,998 - Dsui_0132 0.74 -1.2 134,049 - -0.6 134,095 - Dsui_0132 0.82 -1.2 134,106 - Dsui_0132 0.83 -0.6 134,140 + Dsui_0132 0.86 -1.2 134,243 + -0.6 134,264 + -2.1 134,305 - +0.4 134,319 + +0.4 134,352 - -2.2 134,412 + -3.2 134,412 + -1.2 134,414 - -0.3 134,514 - -1.2 134,587 + Dsui_0133 0.13 -1.6 134,590 - Dsui_0133 0.13 -0.6 134,626 - Dsui_0133 0.17 -0.3
Or see this region's nucleotide sequence