Strain Fitness in Dechlorosoma suillum PS around Dsui_0106

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0105 and Dsui_0106 are separated by 252 nucleotidesDsui_0106 and Dsui_0107 are separated by 149 nucleotides Dsui_0105: Dsui_0105 - NAD-dependent aldehyde dehydrogenase, at 103,031 to 104,461 _0105 Dsui_0106: Dsui_0106 - hypothetical protein, at 104,714 to 105,490 _0106 Dsui_0107: Dsui_0107 - PDZ domain-containing protein, at 105,640 to 106,716 _0107 Position (kb) 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1at 103.726 kb on + strandat 103.726 kb on + strand, within Dsui_0105at 103.734 kb on - strandat 103.734 kb on - strand, within Dsui_0105at 103.734 kb on - strand, within Dsui_0105at 103.785 kb on + strand, within Dsui_0105at 103.829 kb on + strandat 103.830 kb on + strandat 103.926 kb on - strand, within Dsui_0105at 104.029 kb on - strandat 104.042 kb on - strand, within Dsui_0105at 104.072 kb on + strand, within Dsui_0105at 104.073 kb on - strand, within Dsui_0105at 104.149 kb on - strand, within Dsui_0105at 104.211 kb on + strandat 104.227 kb on + strandat 104.463 kb on + strandat 104.494 kb on + strandat 104.502 kb on - strandat 104.513 kb on + strandat 104.551 kb on - strandat 104.553 kb on + strandat 104.696 kb on + strandat 104.715 kb on - strandat 104.715 kb on - strandat 104.744 kb on - strandat 104.955 kb on - strand, within Dsui_0106at 104.965 kb on + strand, within Dsui_0106at 104.984 kb on + strandat 104.997 kb on - strand, within Dsui_0106at 105.068 kb on + strand, within Dsui_0106at 105.076 kb on + strandat 105.113 kb on - strand, within Dsui_0106at 105.202 kb on + strand, within Dsui_0106at 105.210 kb on - strandat 105.210 kb on - strand, within Dsui_0106at 105.275 kb on - strand, within Dsui_0106at 105.458 kb on - strandat 105.467 kb on + strandat 105.564 kb on - strandat 105.712 kb on + strandat 105.713 kb on - strandat 105.720 kb on - strandat 105.720 kb on - strandat 105.771 kb on - strandat 105.830 kb on + strand, within Dsui_0107at 105.830 kb on + strandat 105.832 kb on + strand, within Dsui_0107at 105.832 kb on + strand, within Dsui_0107at 105.838 kb on - strandat 105.838 kb on - strandat 105.861 kb on + strand, within Dsui_0107at 105.863 kb on + strand, within Dsui_0107at 105.889 kb on + strand, within Dsui_0107at 105.942 kb on + strand, within Dsui_0107at 105.942 kb on - strandat 105.944 kb on + strandat 105.949 kb on + strand, within Dsui_0107at 105.949 kb on - strand, within Dsui_0107at 106.032 kb on - strand, within Dsui_0107at 106.059 kb on + strand, within Dsui_0107at 106.073 kb on + strandat 106.096 kb on - strandat 106.126 kb on - strand, within Dsui_0107at 106.129 kb on + strand, within Dsui_0107at 106.161 kb on + strand, within Dsui_0107at 106.169 kb on - strand, within Dsui_0107at 106.169 kb on - strand, within Dsui_0107at 106.172 kb on + strand, within Dsui_0107at 106.274 kb on + strandat 106.294 kb on - strandat 106.294 kb on - strand, within Dsui_0107at 106.327 kb on - strandat 106.332 kb on - strandat 106.351 kb on + strandat 106.352 kb on + strand, within Dsui_0107at 106.354 kb on + strand, within Dsui_0107at 106.357 kb on - strand, within Dsui_0107at 106.357 kb on - strandat 106.397 kb on + strand, within Dsui_0107at 106.397 kb on + strand, within Dsui_0107at 106.397 kb on + strandat 106.405 kb on - strand, within Dsui_0107at 106.405 kb on - strand, within Dsui_0107at 106.410 kb on - strand, within Dsui_0107at 106.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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103,726 + +0.4
103,726 + Dsui_0105 0.49 -0.6
103,734 - -0.6
103,734 - Dsui_0105 0.49 -3.3
103,734 - Dsui_0105 0.49 -1.2
103,785 + Dsui_0105 0.53 -3.2
103,829 + +0.4
103,830 + -1.2
103,926 - Dsui_0105 0.63 -2.7
104,029 - -0.6
104,042 - Dsui_0105 0.71 +0.4
104,072 + Dsui_0105 0.73 -2.0
104,073 - Dsui_0105 0.73 -0.6
104,149 - Dsui_0105 0.78 -1.8
104,211 + +0.4
104,227 + -2.0
104,463 + -0.6
104,494 + +0.4
104,502 - -0.6
104,513 + +0.4
104,551 - +0.4
104,553 + -0.6
104,696 + +0.4
104,715 - -0.3
104,715 - -1.1
104,744 - -1.4
104,955 - Dsui_0106 0.31 -0.6
104,965 + Dsui_0106 0.32 -1.2
104,984 + -0.6
104,997 - Dsui_0106 0.36 -2.8
105,068 + Dsui_0106 0.46 -0.6
105,076 + +0.4
105,113 - Dsui_0106 0.51 +0.4
105,202 + Dsui_0106 0.63 -1.2
105,210 - +0.4
105,210 - Dsui_0106 0.64 -1.3
105,275 - Dsui_0106 0.72 -0.6
105,458 - -3.2
105,467 + -2.2
105,564 - +0.4
105,712 + +0.4
105,713 - -0.6
105,720 - +0.4
105,720 - -0.6
105,771 - -0.6
105,830 + Dsui_0107 0.18 -2.0
105,830 + +0.4
105,832 + Dsui_0107 0.18 -0.6
105,832 + Dsui_0107 0.18 -0.6
105,838 - +0.4
105,838 - -0.6
105,861 + Dsui_0107 0.21 +0.4
105,863 + Dsui_0107 0.21 +0.4
105,889 + Dsui_0107 0.23 -2.2
105,942 + Dsui_0107 0.28 -1.2
105,942 - +0.4
105,944 + +0.4
105,949 + Dsui_0107 0.29 -1.6
105,949 - Dsui_0107 0.29 -1.6
106,032 - Dsui_0107 0.36 -2.0
106,059 + Dsui_0107 0.39 +0.4
106,073 + +0.4
106,096 - -0.6
106,126 - Dsui_0107 0.45 -1.6
106,129 + Dsui_0107 0.45 +0.4
106,161 + Dsui_0107 0.48 +0.4
106,169 - Dsui_0107 0.49 -0.6
106,169 - Dsui_0107 0.49 +0.4
106,172 + Dsui_0107 0.49 -1.6
106,274 + +0.4
106,294 - -2.4
106,294 - Dsui_0107 0.61 -0.6
106,327 - +0.4
106,332 - +0.4
106,351 + +0.4
106,352 + Dsui_0107 0.66 +0.4
106,354 + Dsui_0107 0.66 -2.0
106,357 - Dsui_0107 0.67 -3.0
106,357 - +0.4
106,397 + Dsui_0107 0.70 -1.2
106,397 + Dsui_0107 0.70 -3.0
106,397 + +0.4
106,405 - Dsui_0107 0.71 -0.6
106,405 - Dsui_0107 0.71 +0.4
106,410 - Dsui_0107 0.71 -2.6
106,452 - +0.4

Or see this region's nucleotide sequence