Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0046 and Dsui_0047 are separated by 111 nucleotides Dsui_0047 and Dsui_0048 are separated by 165 nucleotides
Dsui_0046: Dsui_0046 - Zn-dependent oligopeptidase, at 41,555 to 43,636
_0046
Dsui_0047: Dsui_0047 - putative integral membrane protein, at 43,748 to 44,518
_0047
Dsui_0048: Dsui_0048 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 44,684 to 45,622
_0048
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1 at 42.750 kb on + strand at 42.750 kb on + strand, within Dsui_0046 at 42.760 kb on + strand at 42.813 kb on - strand, within Dsui_0046 at 42.821 kb on + strand, within Dsui_0046 at 42.834 kb on - strand, within Dsui_0046 at 42.836 kb on + strand, within Dsui_0046 at 42.896 kb on + strand at 42.981 kb on + strand, within Dsui_0046 at 43.166 kb on - strand, within Dsui_0046 at 43.272 kb on - strand, within Dsui_0046 at 43.292 kb on - strand, within Dsui_0046 at 43.292 kb on - strand, within Dsui_0046 at 43.292 kb on - strand, within Dsui_0046 at 43.311 kb on - strand, within Dsui_0046 at 43.422 kb on + strand at 43.572 kb on - strand at 43.596 kb on - strand at 43.601 kb on - strand at 43.642 kb on + strand at 43.642 kb on + strand at 43.655 kb on - strand at 43.694 kb on + strand at 43.815 kb on - strand at 43.851 kb on - strand, within Dsui_0047 at 43.851 kb on - strand, within Dsui_0047 at 43.851 kb on - strand, within Dsui_0047 at 43.874 kb on - strand, within Dsui_0047 at 44.022 kb on - strand, within Dsui_0047 at 44.184 kb on - strand, within Dsui_0047 at 44.535 kb on + strand at 44.547 kb on + strand at 44.563 kb on + strand at 44.595 kb on + strand at 44.632 kb on - strand at 44.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 42,750 + -0.6 42,750 + Dsui_0046 0.57 -1.2 42,760 + +0.4 42,813 - Dsui_0046 0.60 -1.3 42,821 + Dsui_0046 0.61 -1.2 42,834 - Dsui_0046 0.61 +0.1 42,836 + Dsui_0046 0.62 +0.4 42,896 + +0.4 42,981 + Dsui_0046 0.68 +0.4 43,166 - Dsui_0046 0.77 -0.6 43,272 - Dsui_0046 0.82 -1.3 43,292 - Dsui_0046 0.83 -1.4 43,292 - Dsui_0046 0.83 -0.3 43,292 - Dsui_0046 0.83 -2.5 43,311 - Dsui_0046 0.84 -1.2 43,422 + +0.4 43,572 - -1.2 43,596 - -0.6 43,601 - -0.5 43,642 + -1.2 43,642 + +0.4 43,655 - -0.8 43,694 + +0.4 43,815 - -0.5 43,851 - Dsui_0047 0.13 -0.8 43,851 - Dsui_0047 0.13 -0.1 43,851 - Dsui_0047 0.13 -2.1 43,874 - Dsui_0047 0.16 -0.5 44,022 - Dsui_0047 0.36 -0.5 44,184 - Dsui_0047 0.57 +0.2 44,535 + +0.4 44,547 + +0.4 44,563 + +0.4 44,595 + +0.4 44,632 - -0.2 44,701 - +0.3
Or see this region's nucleotide sequence