Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0033 and Dsui_0034 are separated by 93 nucleotides Dsui_0034 and Dsui_0035 are separated by 267 nucleotides
Dsui_0033: Dsui_0033 - Zn-dependent protease with chaperone function, at 29,186 to 30,007
_0033
Dsui_0034: Dsui_0034 - flagellar capping protein, at 30,101 to 31,537
_0034
Dsui_0035: Dsui_0035 - ankyrin repeat-containing protein, at 31,805 to 32,854
_0035
Position (kb)
30
31
32 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 29.107 kb on - strand at 29.107 kb on - strand at 29.157 kb on - strand at 29.280 kb on - strand at 29.299 kb on + strand, within Dsui_0033 at 29.458 kb on + strand, within Dsui_0033 at 29.507 kb on - strand at 29.600 kb on + strand, within Dsui_0033 at 29.718 kb on + strand, within Dsui_0033 at 29.864 kb on + strand, within Dsui_0033 at 29.951 kb on - strand at 30.106 kb on - strand at 30.123 kb on + strand at 30.172 kb on + strand at 30.175 kb on - strand at 30.219 kb on - strand at 30.277 kb on - strand, within Dsui_0034 at 30.316 kb on - strand, within Dsui_0034 at 30.327 kb on - strand at 30.409 kb on - strand, within Dsui_0034 at 30.481 kb on - strand, within Dsui_0034 at 30.800 kb on + strand, within Dsui_0034 at 30.808 kb on - strand, within Dsui_0034 at 30.947 kb on + strand, within Dsui_0034 at 30.968 kb on + strand, within Dsui_0034 at 31.022 kb on - strand, within Dsui_0034 at 31.104 kb on - strand, within Dsui_0034 at 31.157 kb on + strand, within Dsui_0034 at 31.215 kb on - strand, within Dsui_0034 at 31.328 kb on + strand at 31.391 kb on + strand at 31.399 kb on - strand at 31.417 kb on + strand at 31.484 kb on - strand at 31.549 kb on + strand at 31.569 kb on + strand at 31.604 kb on - strand at 31.622 kb on + strand at 31.630 kb on - strand at 31.827 kb on + strand at 31.835 kb on - strand at 31.883 kb on - strand at 32.118 kb on - strand, within Dsui_0035 at 32.129 kb on - strand, within Dsui_0035 at 32.187 kb on - strand, within Dsui_0035 at 32.206 kb on + strand, within Dsui_0035 at 32.207 kb on + strand at 32.210 kb on - strand, within Dsui_0035 at 32.210 kb on - strand, within Dsui_0035 at 32.215 kb on - strand at 32.215 kb on - strand, within Dsui_0035 at 32.215 kb on - strand, within Dsui_0035 at 32.230 kb on - strand, within Dsui_0035 at 32.280 kb on - strand, within Dsui_0035 at 32.282 kb on + strand, within Dsui_0035 at 32.332 kb on - strand, within Dsui_0035 at 32.433 kb on + strand at 32.477 kb on + strand at 32.486 kb on + strand, within Dsui_0035
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 29,107 - -0.6 29,107 - +0.4 29,157 - -1.6 29,280 - -1.2 29,299 + Dsui_0033 0.14 -1.2 29,458 + Dsui_0033 0.33 +1.9 29,507 - +0.4 29,600 + Dsui_0033 0.50 -3.0 29,718 + Dsui_0033 0.65 -3.1 29,864 + Dsui_0033 0.82 -3.3 29,951 - -0.6 30,106 - -1.2 30,123 + +0.4 30,172 + -2.2 30,175 - -1.2 30,219 - -1.2 30,277 - Dsui_0034 0.12 +0.4 30,316 - Dsui_0034 0.15 -2.4 30,327 - +0.4 30,409 - Dsui_0034 0.21 +0.4 30,481 - Dsui_0034 0.26 -1.6 30,800 + Dsui_0034 0.49 -0.6 30,808 - Dsui_0034 0.49 -0.6 30,947 + Dsui_0034 0.59 -0.6 30,968 + Dsui_0034 0.60 -0.6 31,022 - Dsui_0034 0.64 +0.4 31,104 - Dsui_0034 0.70 -0.6 31,157 + Dsui_0034 0.73 -1.2 31,215 - Dsui_0034 0.78 +0.4 31,328 + +0.4 31,391 + +1.4 31,399 - +0.4 31,417 + -2.4 31,484 - -1.6 31,549 + +0.4 31,569 + -0.6 31,604 - +0.4 31,622 + -0.6 31,630 - +0.4 31,827 + +0.4 31,835 - -0.8 31,883 - -0.5 32,118 - Dsui_0035 0.30 -1.6 32,129 - Dsui_0035 0.31 -1.8 32,187 - Dsui_0035 0.36 -1.2 32,206 + Dsui_0035 0.38 -1.2 32,207 + +0.4 32,210 - Dsui_0035 0.39 -2.4 32,210 - Dsui_0035 0.39 +0.4 32,215 - -2.2 32,215 - Dsui_0035 0.39 -4.0 32,215 - Dsui_0035 0.39 -1.2 32,230 - Dsui_0035 0.40 -1.3 32,280 - Dsui_0035 0.45 -2.8 32,282 + Dsui_0035 0.45 -2.2 32,332 - Dsui_0035 0.50 -3.4 32,433 + +0.4 32,477 + +0.4 32,486 + Dsui_0035 0.65 -0.6
Or see this region's nucleotide sequence