Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0032 and Dsui_0033 are separated by 90 nucleotides Dsui_0033 and Dsui_0034 are separated by 93 nucleotides
Dsui_0032: Dsui_0032 - NAD-dependent protein deacetylase, SIR2 family, at 28,265 to 29,095
_0032
Dsui_0033: Dsui_0033 - Zn-dependent protease with chaperone function, at 29,186 to 30,007
_0033
Dsui_0034: Dsui_0034 - flagellar capping protein, at 30,101 to 31,537
_0034
Position (kb) 29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 28.225 kb on + strand at 28.273 kb on + strand at 28.284 kb on + strand at 28.326 kb on - strand at 28.350 kb on + strand at 28.398 kb on + strand, within Dsui_0032 at 28.474 kb on + strand, within Dsui_0032 at 28.477 kb on - strand at 28.685 kb on - strand at 28.694 kb on + strand at 28.893 kb on + strand, within Dsui_0032 at 28.967 kb on + strand at 28.975 kb on - strand, within Dsui_0032 at 28.999 kb on + strand at 29.007 kb on - strand, within Dsui_0032 at 29.007 kb on - strand at 29.024 kb on - strand at 29.107 kb on - strand at 29.107 kb on - strand at 29.157 kb on - strand at 29.280 kb on - strand at 29.299 kb on + strand, within Dsui_0033 at 29.458 kb on + strand, within Dsui_0033 at 29.507 kb on - strand at 29.600 kb on + strand, within Dsui_0033 at 29.718 kb on + strand, within Dsui_0033 at 29.864 kb on + strand, within Dsui_0033 at 29.951 kb on - strand at 30.106 kb on - strand at 30.123 kb on + strand at 30.172 kb on + strand at 30.175 kb on - strand at 30.219 kb on - strand at 30.277 kb on - strand, within Dsui_0034 at 30.316 kb on - strand, within Dsui_0034 at 30.327 kb on - strand at 30.409 kb on - strand, within Dsui_0034 at 30.481 kb on - strand, within Dsui_0034 at 30.800 kb on + strand, within Dsui_0034 at 30.808 kb on - strand, within Dsui_0034 at 30.947 kb on + strand, within Dsui_0034 at 30.968 kb on + strand, within Dsui_0034
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 28,225 + -0.6 28,273 + -0.6 28,284 + -1.2 28,326 - +0.4 28,350 + +0.4 28,398 + Dsui_0032 0.16 +0.4 28,474 + Dsui_0032 0.25 -1.2 28,477 - +0.4 28,685 - -1.2 28,694 + +0.4 28,893 + Dsui_0032 0.76 +0.4 28,967 + +0.4 28,975 - Dsui_0032 0.85 -1.6 28,999 + -0.6 29,007 - Dsui_0032 0.89 -1.6 29,007 - +0.4 29,024 - +0.4 29,107 - -0.6 29,107 - +0.4 29,157 - -1.6 29,280 - -1.2 29,299 + Dsui_0033 0.14 -1.2 29,458 + Dsui_0033 0.33 +1.9 29,507 - +0.4 29,600 + Dsui_0033 0.50 -3.0 29,718 + Dsui_0033 0.65 -3.1 29,864 + Dsui_0033 0.82 -3.3 29,951 - -0.6 30,106 - -1.2 30,123 + +0.4 30,172 + -2.2 30,175 - -1.2 30,219 - -1.2 30,277 - Dsui_0034 0.12 +0.4 30,316 - Dsui_0034 0.15 -2.4 30,327 - +0.4 30,409 - Dsui_0034 0.21 +0.4 30,481 - Dsui_0034 0.26 -1.6 30,800 + Dsui_0034 0.49 -0.6 30,808 - Dsui_0034 0.49 -0.6 30,947 + Dsui_0034 0.59 -0.6 30,968 + Dsui_0034 0.60 -0.6
Or see this region's nucleotide sequence