Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0011 and Dsui_0012 are separated by 221 nucleotides Dsui_0012 and Dsui_0013 are separated by 1 nucleotides Dsui_0013 and Dsui_0014 are separated by 496 nucleotides
Dsui_0011: Dsui_0011 - isocitrate lyase, at 9,345 to 10,655
_0011
Dsui_0012: Dsui_0012 - putative permease, DMT superfamily, at 10,877 to 11,764
_0012
Dsui_0013: Dsui_0013 - Thioredoxin, at 11,766 to 12,266
_0013
Dsui_0014: Dsui_0014 - putative membrane protein, at 12,763 to 13,377
_0014
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 9.928 kb on + strand, within Dsui_0011 at 9.965 kb on - strand, within Dsui_0011 at 10.018 kb on - strand, within Dsui_0011 at 10.018 kb on - strand, within Dsui_0011 at 10.035 kb on - strand, within Dsui_0011 at 10.040 kb on - strand, within Dsui_0011 at 10.057 kb on + strand, within Dsui_0011 at 10.065 kb on - strand, within Dsui_0011 at 10.150 kb on + strand, within Dsui_0011 at 10.158 kb on - strand, within Dsui_0011 at 10.258 kb on - strand, within Dsui_0011 at 10.258 kb on - strand, within Dsui_0011 at 10.297 kb on - strand, within Dsui_0011 at 10.371 kb on + strand, within Dsui_0011 at 10.432 kb on + strand, within Dsui_0011 at 10.456 kb on - strand, within Dsui_0011 at 10.456 kb on - strand, within Dsui_0011 at 10.467 kb on + strand, within Dsui_0011 at 10.531 kb on - strand at 10.614 kb on - strand at 10.625 kb on - strand at 10.625 kb on - strand at 10.690 kb on - strand at 10.748 kb on - strand at 10.773 kb on + strand at 10.773 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.781 kb on - strand at 10.833 kb on - strand at 10.854 kb on + strand at 10.867 kb on + strand at 10.867 kb on + strand at 10.875 kb on - strand at 11.015 kb on - strand, within Dsui_0012 at 11.021 kb on - strand at 11.045 kb on + strand, within Dsui_0012 at 11.105 kb on - strand, within Dsui_0012 at 11.110 kb on - strand, within Dsui_0012 at 11.163 kb on - strand, within Dsui_0012 at 11.255 kb on - strand, within Dsui_0012 at 11.267 kb on - strand, within Dsui_0012 at 11.274 kb on - strand, within Dsui_0012 at 11.343 kb on + strand, within Dsui_0012 at 11.408 kb on + strand, within Dsui_0012 at 11.428 kb on - strand, within Dsui_0012 at 11.434 kb on + strand, within Dsui_0012 at 11.471 kb on + strand, within Dsui_0012 at 11.524 kb on - strand at 11.536 kb on + strand, within Dsui_0012 at 11.536 kb on + strand, within Dsui_0012 at 11.547 kb on + strand, within Dsui_0012 at 11.550 kb on - strand, within Dsui_0012 at 11.598 kb on + strand, within Dsui_0012 at 11.610 kb on - strand at 11.610 kb on - strand, within Dsui_0012 at 11.666 kb on - strand, within Dsui_0012 at 11.676 kb on + strand at 11.714 kb on + strand at 11.727 kb on - strand at 11.759 kb on + strand at 11.767 kb on - strand at 11.772 kb on - strand at 11.951 kb on + strand at 11.983 kb on - strand, within Dsui_0013 at 12.306 kb on + strand at 12.374 kb on + strand at 12.604 kb on - strand at 12.609 kb on - strand at 12.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 9,928 + Dsui_0011 0.44 -0.6 9,965 - Dsui_0011 0.47 +0.4 10,018 - Dsui_0011 0.51 -1.6 10,018 - Dsui_0011 0.51 -1.2 10,035 - Dsui_0011 0.53 +0.4 10,040 - Dsui_0011 0.53 -0.6 10,057 + Dsui_0011 0.54 -0.6 10,065 - Dsui_0011 0.55 +0.4 10,150 + Dsui_0011 0.61 -0.6 10,158 - Dsui_0011 0.62 -2.0 10,258 - Dsui_0011 0.70 -1.2 10,258 - Dsui_0011 0.70 +0.4 10,297 - Dsui_0011 0.73 -1.2 10,371 + Dsui_0011 0.78 -2.4 10,432 + Dsui_0011 0.83 -2.8 10,456 - Dsui_0011 0.85 +0.4 10,456 - Dsui_0011 0.85 +0.4 10,467 + Dsui_0011 0.86 +0.4 10,531 - -3.0 10,614 - +0.4 10,625 - -1.6 10,625 - +0.4 10,690 - -0.6 10,748 - +0.4 10,773 + -1.2 10,773 - +0.4 10,781 - -0.6 10,781 - +0.4 10,781 - +0.4 10,781 - +0.4 10,781 - +0.4 10,781 - +0.4 10,833 - -1.2 10,854 + -1.2 10,867 + +0.8 10,867 + -1.8 10,875 - +0.4 11,015 - Dsui_0012 0.16 -1.2 11,021 - +0.4 11,045 + Dsui_0012 0.19 -2.4 11,105 - Dsui_0012 0.26 -2.0 11,110 - Dsui_0012 0.26 -1.6 11,163 - Dsui_0012 0.32 -2.8 11,255 - Dsui_0012 0.43 -1.2 11,267 - Dsui_0012 0.44 +0.4 11,274 - Dsui_0012 0.45 +0.4 11,343 + Dsui_0012 0.52 -0.3 11,408 + Dsui_0012 0.60 -1.4 11,428 - Dsui_0012 0.62 -2.4 11,434 + Dsui_0012 0.63 -1.3 11,471 + Dsui_0012 0.67 +0.7 11,524 - -0.6 11,536 + Dsui_0012 0.74 -0.1 11,536 + Dsui_0012 0.74 -3.1 11,547 + Dsui_0012 0.75 -0.5 11,550 - Dsui_0012 0.76 +0.4 11,598 + Dsui_0012 0.81 -1.4 11,610 - -0.6 11,610 - Dsui_0012 0.83 -0.6 11,666 - Dsui_0012 0.89 -1.2 11,676 + -0.1 11,714 + -0.0 11,727 - -3.0 11,759 + -2.2 11,767 - -0.6 11,772 - -2.0 11,951 + +0.4 11,983 - Dsui_0013 0.43 +0.5 12,306 + +0.4 12,374 + +0.4 12,604 - +0.4 12,609 - -2.4 12,711 - -0.6
Or see this region's nucleotide sequence