Strain Fitness in Dechlorosoma suillum PS around Dsui_0010

Experiment: ALP with Cisplatin 0.0009 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0009 and Dsui_0010 are separated by 107 nucleotidesDsui_0010 and Dsui_0011 are separated by 417 nucleotides Dsui_0009: Dsui_0009 - ATP-dependent Clp protease ATP-binding subunit clpA, at 6,073 to 8,328 _0009 Dsui_0010: Dsui_0010 - RraA family protein, at 8,436 to 8,927 _0010 Dsui_0011: Dsui_0011 - isocitrate lyase, at 9,345 to 10,655 _0011 Position (kb) 8 9Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 7.609 kb on + strand, within Dsui_0009at 7.612 kb on - strand, within Dsui_0009at 7.617 kb on - strand, within Dsui_0009at 7.617 kb on - strand, within Dsui_0009at 7.675 kb on + strand, within Dsui_0009at 7.713 kb on + strand, within Dsui_0009at 7.734 kb on + strand, within Dsui_0009at 7.734 kb on + strand, within Dsui_0009at 7.742 kb on - strandat 7.979 kb on - strand, within Dsui_0009at 8.105 kb on - strandat 8.126 kb on + strandat 8.157 kb on + strandat 8.269 kb on - strandat 8.331 kb on - strandat 8.335 kb on - strandat 8.441 kb on - strandat 8.443 kb on + strandat 8.449 kb on + strandat 8.449 kb on + strandat 8.449 kb on + strandat 8.449 kb on + strandat 8.449 kb on + strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.485 kb on + strandat 8.485 kb on + strandat 8.521 kb on - strand, within Dsui_0010at 8.533 kb on + strand, within Dsui_0010at 8.562 kb on - strand, within Dsui_0010at 8.601 kb on - strand, within Dsui_0010at 8.601 kb on - strand, within Dsui_0010at 8.606 kb on - strand, within Dsui_0010at 8.618 kb on + strand, within Dsui_0010at 8.626 kb on - strand, within Dsui_0010at 8.626 kb on - strand, within Dsui_0010at 8.764 kb on + strand, within Dsui_0010at 8.781 kb on + strand, within Dsui_0010at 8.894 kb on - strandat 8.991 kb on + strandat 9.010 kb on + strandat 9.070 kb on - strandat 9.089 kb on + strandat 9.103 kb on + strandat 9.279 kb on + strandat 9.279 kb on + strandat 9.281 kb on + strandat 9.287 kb on - strandat 9.291 kb on + strandat 9.291 kb on + strandat 9.352 kb on + strandat 9.360 kb on - strandat 9.383 kb on + strandat 9.457 kb on + strandat 9.478 kb on + strand, within Dsui_0011at 9.486 kb on - strand, within Dsui_0011at 9.501 kb on - strand, within Dsui_0011at 9.587 kb on + strand, within Dsui_0011at 9.587 kb on + strand, within Dsui_0011at 9.590 kb on - strand, within Dsui_0011at 9.629 kb on + strand, within Dsui_0011at 9.641 kb on + strand, within Dsui_0011at 9.677 kb on - strand, within Dsui_0011at 9.763 kb on + strand, within Dsui_0011at 9.771 kb on - strand, within Dsui_0011at 9.771 kb on - strand, within Dsui_0011at 9.850 kb on + strand, within Dsui_0011

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml
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7,609 + Dsui_0009 0.68 -3.6
7,612 - Dsui_0009 0.68 -2.0
7,617 - Dsui_0009 0.68 -1.2
7,617 - Dsui_0009 0.68 -2.0
7,675 + Dsui_0009 0.71 -3.3
7,713 + Dsui_0009 0.73 -3.8
7,734 + Dsui_0009 0.74 -4.6
7,734 + Dsui_0009 0.74 -4.2
7,742 - +0.4
7,979 - Dsui_0009 0.84 -2.2
8,105 - -2.0
8,126 + -7.1
8,157 + -4.7
8,269 - -1.2
8,331 - -2.8
8,335 - -0.6
8,441 - -2.0
8,443 + +0.2
8,449 + -0.1
8,449 + -0.9
8,449 + -1.9
8,449 + -2.6
8,449 + -0.6
8,457 - -0.6
8,457 - +0.4
8,457 - +0.4
8,457 - -0.6
8,457 - -1.2
8,457 - +0.4
8,457 - +0.0
8,485 + -2.8
8,485 + -2.0
8,521 - Dsui_0010 0.17 -1.2
8,533 + Dsui_0010 0.20 -0.4
8,562 - Dsui_0010 0.26 -0.6
8,601 - Dsui_0010 0.34 -2.0
8,601 - Dsui_0010 0.34 -1.6
8,606 - Dsui_0010 0.35 +0.4
8,618 + Dsui_0010 0.37 -3.0
8,626 - Dsui_0010 0.39 +0.4
8,626 - Dsui_0010 0.39 -0.6
8,764 + Dsui_0010 0.67 -0.9
8,781 + Dsui_0010 0.70 +0.1
8,894 - +0.4
8,991 + -3.2
9,010 + +0.4
9,070 - +0.4
9,089 + -2.8
9,103 + +0.4
9,279 + -2.0
9,279 + +0.4
9,281 + -3.5
9,287 - +0.4
9,291 + -2.2
9,291 + -1.6
9,352 + +2.7
9,360 - -0.6
9,383 + -0.6
9,457 + -2.0
9,478 + Dsui_0011 0.10 -3.5
9,486 - Dsui_0011 0.11 -1.6
9,501 - Dsui_0011 0.12 +0.4
9,587 + Dsui_0011 0.18 -2.2
9,587 + Dsui_0011 0.18 -2.2
9,590 - Dsui_0011 0.19 +0.4
9,629 + Dsui_0011 0.22 +1.7
9,641 + Dsui_0011 0.23 -0.6
9,677 - Dsui_0011 0.25 -3.4
9,763 + Dsui_0011 0.32 +0.4
9,771 - Dsui_0011 0.32 +0.4
9,771 - Dsui_0011 0.32 -2.0
9,850 + Dsui_0011 0.39 -0.6

Or see this region's nucleotide sequence