Experiment: ALP with Cisplatin 0.0009 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0009 and Dsui_0010 are separated by 107 nucleotides Dsui_0010 and Dsui_0011 are separated by 417 nucleotides
Dsui_0009: Dsui_0009 - ATP-dependent Clp protease ATP-binding subunit clpA, at 6,073 to 8,328
_0009
Dsui_0010: Dsui_0010 - RraA family protein, at 8,436 to 8,927
_0010
Dsui_0011: Dsui_0011 - isocitrate lyase, at 9,345 to 10,655
_0011
Position (kb)
8
9 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 7.609 kb on + strand, within Dsui_0009 at 7.612 kb on - strand, within Dsui_0009 at 7.617 kb on - strand, within Dsui_0009 at 7.617 kb on - strand, within Dsui_0009 at 7.675 kb on + strand, within Dsui_0009 at 7.713 kb on + strand, within Dsui_0009 at 7.734 kb on + strand, within Dsui_0009 at 7.734 kb on + strand, within Dsui_0009 at 7.742 kb on - strand at 7.979 kb on - strand, within Dsui_0009 at 8.105 kb on - strand at 8.126 kb on + strand at 8.157 kb on + strand at 8.269 kb on - strand at 8.331 kb on - strand at 8.335 kb on - strand at 8.441 kb on - strand at 8.443 kb on + strand at 8.449 kb on + strand at 8.449 kb on + strand at 8.449 kb on + strand at 8.449 kb on + strand at 8.449 kb on + strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.457 kb on - strand at 8.485 kb on + strand at 8.485 kb on + strand at 8.521 kb on - strand, within Dsui_0010 at 8.533 kb on + strand, within Dsui_0010 at 8.562 kb on - strand, within Dsui_0010 at 8.601 kb on - strand, within Dsui_0010 at 8.601 kb on - strand, within Dsui_0010 at 8.606 kb on - strand, within Dsui_0010 at 8.618 kb on + strand, within Dsui_0010 at 8.626 kb on - strand, within Dsui_0010 at 8.626 kb on - strand, within Dsui_0010 at 8.764 kb on + strand, within Dsui_0010 at 8.781 kb on + strand, within Dsui_0010 at 8.894 kb on - strand at 8.991 kb on + strand at 9.010 kb on + strand at 9.070 kb on - strand at 9.089 kb on + strand at 9.103 kb on + strand at 9.279 kb on + strand at 9.279 kb on + strand at 9.281 kb on + strand at 9.287 kb on - strand at 9.291 kb on + strand at 9.291 kb on + strand at 9.352 kb on + strand at 9.360 kb on - strand at 9.383 kb on + strand at 9.457 kb on + strand at 9.478 kb on + strand, within Dsui_0011 at 9.486 kb on - strand, within Dsui_0011 at 9.501 kb on - strand, within Dsui_0011 at 9.587 kb on + strand, within Dsui_0011 at 9.587 kb on + strand, within Dsui_0011 at 9.590 kb on - strand, within Dsui_0011 at 9.629 kb on + strand, within Dsui_0011 at 9.641 kb on + strand, within Dsui_0011 at 9.677 kb on - strand, within Dsui_0011 at 9.763 kb on + strand, within Dsui_0011 at 9.771 kb on - strand, within Dsui_0011 at 9.771 kb on - strand, within Dsui_0011 at 9.850 kb on + strand, within Dsui_0011
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0009 mg/ml remove 7,609 + Dsui_0009 0.68 -3.6 7,612 - Dsui_0009 0.68 -2.0 7,617 - Dsui_0009 0.68 -1.2 7,617 - Dsui_0009 0.68 -2.0 7,675 + Dsui_0009 0.71 -3.3 7,713 + Dsui_0009 0.73 -3.8 7,734 + Dsui_0009 0.74 -4.6 7,734 + Dsui_0009 0.74 -4.2 7,742 - +0.4 7,979 - Dsui_0009 0.84 -2.2 8,105 - -2.0 8,126 + -7.1 8,157 + -4.7 8,269 - -1.2 8,331 - -2.8 8,335 - -0.6 8,441 - -2.0 8,443 + +0.2 8,449 + -0.1 8,449 + -0.9 8,449 + -1.9 8,449 + -2.6 8,449 + -0.6 8,457 - -0.6 8,457 - +0.4 8,457 - +0.4 8,457 - -0.6 8,457 - -1.2 8,457 - +0.4 8,457 - +0.0 8,485 + -2.8 8,485 + -2.0 8,521 - Dsui_0010 0.17 -1.2 8,533 + Dsui_0010 0.20 -0.4 8,562 - Dsui_0010 0.26 -0.6 8,601 - Dsui_0010 0.34 -2.0 8,601 - Dsui_0010 0.34 -1.6 8,606 - Dsui_0010 0.35 +0.4 8,618 + Dsui_0010 0.37 -3.0 8,626 - Dsui_0010 0.39 +0.4 8,626 - Dsui_0010 0.39 -0.6 8,764 + Dsui_0010 0.67 -0.9 8,781 + Dsui_0010 0.70 +0.1 8,894 - +0.4 8,991 + -3.2 9,010 + +0.4 9,070 - +0.4 9,089 + -2.8 9,103 + +0.4 9,279 + -2.0 9,279 + +0.4 9,281 + -3.5 9,287 - +0.4 9,291 + -2.2 9,291 + -1.6 9,352 + +2.7 9,360 - -0.6 9,383 + -0.6 9,457 + -2.0 9,478 + Dsui_0011 0.10 -3.5 9,486 - Dsui_0011 0.11 -1.6 9,501 - Dsui_0011 0.12 +0.4 9,587 + Dsui_0011 0.18 -2.2 9,587 + Dsui_0011 0.18 -2.2 9,590 - Dsui_0011 0.19 +0.4 9,629 + Dsui_0011 0.22 +1.7 9,641 + Dsui_0011 0.23 -0.6 9,677 - Dsui_0011 0.25 -3.4 9,763 + Dsui_0011 0.32 +0.4 9,771 - Dsui_0011 0.32 +0.4 9,771 - Dsui_0011 0.32 -2.0 9,850 + Dsui_0011 0.39 -0.6
Or see this region's nucleotide sequence