Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08630

Experiment: D-Trehalose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS08625 and BWI76_RS08630 are separated by 205 nucleotidesBWI76_RS08630 and BWI76_RS08635 are separated by 67 nucleotides BWI76_RS08625: BWI76_RS08625 - UDP-glucose 4-epimerase GalE, at 1,819,328 to 1,820,339 _RS08625 BWI76_RS08630: BWI76_RS08630 - molybdate ABC transporter ATP-binding protein ModF, at 1,820,545 to 1,822,020 _RS08630 BWI76_RS08635: BWI76_RS08635 - molybdenum-dependent transcriptional regulator, at 1,822,088 to 1,822,876 _RS08635 Position (kb) 1820 1821 1822 1823Strain fitness (log2 ratio) -1 0 1 2at 1819.567 kb on - strand, within BWI76_RS08625at 1819.866 kb on - strand, within BWI76_RS08625at 1820.532 kb on + strandat 1820.540 kb on - strandat 1820.598 kb on + strandat 1820.623 kb on - strandat 1820.672 kb on + strandat 1820.706 kb on + strand, within BWI76_RS08630at 1820.721 kb on + strand, within BWI76_RS08630at 1820.890 kb on - strand, within BWI76_RS08630at 1821.077 kb on + strand, within BWI76_RS08630at 1821.092 kb on - strand, within BWI76_RS08630at 1821.555 kb on + strand, within BWI76_RS08630at 1821.580 kb on + strand, within BWI76_RS08630at 1821.748 kb on + strand, within BWI76_RS08630at 1821.952 kb on - strandat 1822.063 kb on - strandat 1822.231 kb on + strand, within BWI76_RS08635at 1822.565 kb on + strand, within BWI76_RS08635at 1822.640 kb on + strand, within BWI76_RS08635at 1822.661 kb on + strand, within BWI76_RS08635at 1822.711 kb on - strand, within BWI76_RS08635at 1822.792 kb on - strand, within BWI76_RS08635at 1822.807 kb on + strandat 1822.959 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
remove
1,819,567 - BWI76_RS08625 0.24 +0.5
1,819,866 - BWI76_RS08625 0.53 +0.2
1,820,532 + +0.0
1,820,540 - +1.4
1,820,598 + -0.4
1,820,623 - +0.4
1,820,672 + +0.8
1,820,706 + BWI76_RS08630 0.11 +0.6
1,820,721 + BWI76_RS08630 0.12 +0.1
1,820,890 - BWI76_RS08630 0.23 +0.9
1,821,077 + BWI76_RS08630 0.36 -0.1
1,821,092 - BWI76_RS08630 0.37 +0.6
1,821,555 + BWI76_RS08630 0.68 -1.0
1,821,580 + BWI76_RS08630 0.70 +2.1
1,821,748 + BWI76_RS08630 0.82 -0.1
1,821,952 - -0.6
1,822,063 - +0.8
1,822,231 + BWI76_RS08635 0.18 -0.3
1,822,565 + BWI76_RS08635 0.60 -1.2
1,822,640 + BWI76_RS08635 0.70 +0.2
1,822,661 + BWI76_RS08635 0.73 -0.5
1,822,711 - BWI76_RS08635 0.79 +0.0
1,822,792 - BWI76_RS08635 0.89 -0.2
1,822,807 + +0.4
1,822,959 + -1.3

Or see this region's nucleotide sequence