Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12230

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12225 and AZOBR_RS12230 are separated by 115 nucleotides AZOBR_RS12225: AZOBR_RS12225 - hypothetical protein, at 2,566,081 to 2,566,317 _RS12225 AZOBR_RS12230: AZOBR_RS12230 - hypothetical protein, at 2,566,433 to 2,566,663 _RS12230 Position (kb) 2566 2567Strain fitness (log2 ratio) -1 0 1at 2565.537 kb on + strandat 2565.537 kb on + strandat 2565.538 kb on - strandat 2565.933 kb on + strandat 2566.434 kb on + strandat 2566.435 kb on - strandat 2566.435 kb on - strandat 2566.776 kb on + strandat 2566.776 kb on + strandat 2566.776 kb on + strandat 2566.776 kb on + strandat 2566.776 kb on + strandat 2566.784 kb on - strandat 2566.956 kb on + strandat 2566.957 kb on - strandat 2566.957 kb on - strandat 2566.957 kb on - strandat 2567.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days
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2,565,537 + -0.3
2,565,537 + -0.3
2,565,538 - +0.2
2,565,933 + +0.8
2,566,434 + +0.2
2,566,435 - +0.8
2,566,435 - +0.3
2,566,776 + -1.2
2,566,776 + -0.5
2,566,776 + +0.1
2,566,776 + -1.6
2,566,776 + -1.4
2,566,784 - +0.5
2,566,956 + -1.2
2,566,957 - +0.0
2,566,957 - -0.1
2,566,957 - -0.6
2,567,025 - -0.2

Or see this region's nucleotide sequence