Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01625 and AZOBR_RS01630 are separated by 122 nucleotides AZOBR_RS01630 and AZOBR_RS01635 are separated by 12 nucleotides AZOBR_RS01635 and AZOBR_RS01640 are separated by 526 nucleotides
AZOBR_RS01625: AZOBR_RS01625 - hypothetical protein, at 333,282 to 333,968
_RS01625
AZOBR_RS01630: AZOBR_RS01630 - DNA mismatch repair protein MutS, at 334,091 to 334,663
_RS01630
AZOBR_RS01635: AZOBR_RS01635 - XRE family transcriptional regulator, at 334,676 to 335,080
_RS01635
AZOBR_RS01640: AZOBR_RS01640 - hypothetical protein, at 335,607 to 336,788
_RS01640
Position (kb) 334
335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 333.992 kb on - strand at 333.992 kb on - strand at 334.502 kb on + strand, within AZOBR_RS01630 at 334.502 kb on + strand, within AZOBR_RS01630 at 334.503 kb on - strand, within AZOBR_RS01630 at 334.503 kb on - strand, within AZOBR_RS01630 at 334.503 kb on - strand, within AZOBR_RS01630 at 334.625 kb on + strand at 334.625 kb on + strand at 334.625 kb on + strand at 334.626 kb on - strand at 334.626 kb on - strand at 334.626 kb on - strand at 334.626 kb on - strand at 334.770 kb on - strand, within AZOBR_RS01635 at 335.078 kb on + strand at 335.193 kb on + strand at 335.246 kb on + strand at 335.246 kb on + strand at 335.246 kb on + strand at 335.246 kb on + strand at 335.856 kb on + strand, within AZOBR_RS01640 at 335.856 kb on + strand, within AZOBR_RS01640 at 335.856 kb on + strand, within AZOBR_RS01640 at 335.857 kb on - strand, within AZOBR_RS01640 at 335.857 kb on - strand, within AZOBR_RS01640 at 335.857 kb on - strand, within AZOBR_RS01640 at 335.868 kb on + strand, within AZOBR_RS01640 at 335.869 kb on - strand, within AZOBR_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days remove 333,992 - -0.5 333,992 - -0.6 334,502 + AZOBR_RS01630 0.72 -0.1 334,502 + AZOBR_RS01630 0.72 -0.5 334,503 - AZOBR_RS01630 0.72 +0.8 334,503 - AZOBR_RS01630 0.72 +0.7 334,503 - AZOBR_RS01630 0.72 -1.0 334,625 + +0.8 334,625 + -0.5 334,625 + +0.4 334,626 - -3.1 334,626 - +0.3 334,626 - -1.0 334,626 - +0.2 334,770 - AZOBR_RS01635 0.23 -1.7 335,078 + -0.0 335,193 + -2.4 335,246 + -1.2 335,246 + +0.0 335,246 + +0.0 335,246 + -1.0 335,856 + AZOBR_RS01640 0.21 +0.3 335,856 + AZOBR_RS01640 0.21 +0.2 335,856 + AZOBR_RS01640 0.21 +0.0 335,857 - AZOBR_RS01640 0.21 -0.1 335,857 - AZOBR_RS01640 0.21 +1.0 335,857 - AZOBR_RS01640 0.21 -0.4 335,868 + AZOBR_RS01640 0.22 +0.9 335,869 - AZOBR_RS01640 0.22 -0.4
Or see this region's nucleotide sequence