Experiment: L-Malic (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00600 and AZOBR_RS00605 are separated by 283 nucleotides AZOBR_RS00605 and AZOBR_RS00610 are separated by 116 nucleotides AZOBR_RS00610 and AZOBR_RS00615 are separated by 10 nucleotides AZOBR_RS00615 and AZOBR_RS00620 are separated by 132 nucleotides
AZOBR_RS00600: AZOBR_RS00600 - thioredoxin, at 123,988 to 124,311
_RS00600
AZOBR_RS00605: AZOBR_RS00605 - transcriptional Regulator LysR family; putative Glycine cleavage system transcriptional activator (Gcv operon activator), at 124,595 to 125,491
_RS00605
AZOBR_RS00610: AZOBR_RS00610 - hypothetical protein, at 125,608 to 125,805
_RS00610
AZOBR_RS00615: AZOBR_RS00615 - phosphotyrosine protein phosphatase, at 125,816 to 126,289
_RS00615
AZOBR_RS00620: AZOBR_RS00620 - NAD-dependent deacetylase, at 126,422 to 127,135
_RS00620
Position (kb) 124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 123.660 kb on + strand at 123.788 kb on + strand at 123.978 kb on + strand at 124.382 kb on + strand at 124.382 kb on + strand at 124.800 kb on - strand, within AZOBR_RS00605 at 124.800 kb on - strand, within AZOBR_RS00605 at 124.800 kb on - strand, within AZOBR_RS00605 at 125.400 kb on - strand, within AZOBR_RS00605 at 125.907 kb on + strand, within AZOBR_RS00615 at 125.908 kb on - strand, within AZOBR_RS00615 at 125.910 kb on + strand, within AZOBR_RS00615 at 125.950 kb on - strand at 125.950 kb on - strand, within AZOBR_RS00615 at 126.037 kb on + strand, within AZOBR_RS00615 at 126.038 kb on - strand, within AZOBR_RS00615 at 126.038 kb on - strand, within AZOBR_RS00615 at 126.039 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.156 kb on + strand, within AZOBR_RS00615 at 126.157 kb on - strand, within AZOBR_RS00615 at 126.157 kb on - strand at 126.327 kb on + strand at 126.328 kb on - strand at 126.328 kb on - strand at 126.328 kb on - strand at 126.373 kb on + strand at 126.373 kb on + strand at 126.388 kb on + strand at 126.388 kb on + strand at 126.388 kb on + strand at 126.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 8 days remove 123,660 + +0.0 123,788 + -2.0 123,978 + -3.3 124,382 + -0.1 124,382 + -0.8 124,800 - AZOBR_RS00605 0.23 +0.3 124,800 - AZOBR_RS00605 0.23 -0.2 124,800 - AZOBR_RS00605 0.23 +0.2 125,400 - AZOBR_RS00605 0.90 -0.4 125,907 + AZOBR_RS00615 0.19 -0.5 125,908 - AZOBR_RS00615 0.19 -0.3 125,910 + AZOBR_RS00615 0.20 +0.8 125,950 - -0.7 125,950 - AZOBR_RS00615 0.28 +0.5 126,037 + AZOBR_RS00615 0.47 +1.1 126,038 - AZOBR_RS00615 0.47 -0.2 126,038 - AZOBR_RS00615 0.47 +0.4 126,039 + AZOBR_RS00615 0.47 +0.6 126,156 + AZOBR_RS00615 0.72 +0.2 126,156 + AZOBR_RS00615 0.72 +0.2 126,156 + AZOBR_RS00615 0.72 +2.0 126,156 + AZOBR_RS00615 0.72 -0.6 126,156 + AZOBR_RS00615 0.72 -1.5 126,156 + AZOBR_RS00615 0.72 -0.2 126,156 + AZOBR_RS00615 0.72 -1.1 126,156 + AZOBR_RS00615 0.72 -1.3 126,157 - AZOBR_RS00615 0.72 -0.6 126,157 - +1.2 126,327 + -0.1 126,328 - +0.3 126,328 - +1.3 126,328 - -0.7 126,373 + +2.2 126,373 + -1.0 126,388 + -1.0 126,388 + +0.2 126,388 + -0.7 126,389 - +1.8
Or see this region's nucleotide sequence