Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27375

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27370 and AO353_27375 are separated by 43 nucleotidesAO353_27375 and AO353_27380 are separated by 131 nucleotidesAO353_27380 and AO353_27385 are separated by 525 nucleotides AO353_27370: AO353_27370 - terminase, at 5,979,349 to 5,981,238 _27370 AO353_27375: AO353_27375 - DNA packaging protein, at 5,981,282 to 5,981,806 _27375 AO353_27380: AO353_27380 - pyocin R2, holin, at 5,981,938 to 5,982,276 _27380 AO353_27385: AO353_27385 - hypothetical protein, at 5,982,802 to 5,983,164 _27385 Position (kb) 5981 5982Strain fitness (log2 ratio) -2 -1 0 1at 5980.377 kb on - strand, within AO353_27370at 5980.377 kb on - strand, within AO353_27370at 5980.481 kb on + strand, within AO353_27370at 5980.481 kb on + strand, within AO353_27370at 5980.481 kb on + strand, within AO353_27370at 5980.481 kb on + strand, within AO353_27370at 5980.481 kb on + strand, within AO353_27370at 5980.482 kb on - strand, within AO353_27370at 5980.482 kb on - strand, within AO353_27370at 5980.482 kb on - strand, within AO353_27370at 5980.482 kb on - strand, within AO353_27370at 5980.482 kb on - strand, within AO353_27370at 5980.482 kb on - strand, within AO353_27370at 5980.482 kb on - strand, within AO353_27370at 5980.511 kb on + strand, within AO353_27370at 5980.511 kb on + strand, within AO353_27370at 5980.526 kb on + strand, within AO353_27370at 5980.526 kb on + strand, within AO353_27370at 5980.526 kb on + strand, within AO353_27370at 5980.527 kb on - strand, within AO353_27370at 5980.729 kb on - strand, within AO353_27370at 5980.864 kb on - strand, within AO353_27370at 5980.961 kb on + strand, within AO353_27370at 5980.961 kb on + strand, within AO353_27370at 5980.961 kb on + strand, within AO353_27370at 5980.961 kb on + strand, within AO353_27370at 5980.962 kb on - strand, within AO353_27370at 5980.962 kb on - strand, within AO353_27370at 5980.962 kb on - strand, within AO353_27370at 5980.962 kb on - strand, within AO353_27370at 5981.168 kb on + strandat 5981.210 kb on + strandat 5981.361 kb on + strand, within AO353_27375at 5981.361 kb on + strand, within AO353_27375at 5981.361 kb on + strand, within AO353_27375at 5981.362 kb on - strand, within AO353_27375at 5981.465 kb on + strand, within AO353_27375at 5981.466 kb on - strand, within AO353_27375at 5981.470 kb on + strand, within AO353_27375at 5981.471 kb on - strand, within AO353_27375at 5981.471 kb on - strand, within AO353_27375at 5981.471 kb on - strand, within AO353_27375at 5981.676 kb on + strand, within AO353_27375at 5981.677 kb on - strand, within AO353_27375at 5981.810 kb on + strandat 5981.810 kb on + strandat 5981.811 kb on - strandat 5981.811 kb on - strandat 5981.811 kb on - strandat 5981.811 kb on - strandat 5981.811 kb on - strandat 5981.939 kb on + strandat 5982.229 kb on + strand, within AO353_27380at 5982.229 kb on + strand, within AO353_27380at 5982.230 kb on - strand, within AO353_27380at 5982.289 kb on - strandat 5982.357 kb on + strandat 5982.370 kb on + strandat 5982.371 kb on - strandat 5982.378 kb on - strandat 5982.410 kb on + strandat 5982.411 kb on - strandat 5982.427 kb on + strandat 5982.427 kb on + strandat 5982.427 kb on + strandat 5982.427 kb on + strandat 5982.427 kb on + strandat 5982.428 kb on - strandat 5982.509 kb on + strandat 5982.509 kb on + strandat 5982.509 kb on + strandat 5982.510 kb on - strandat 5982.646 kb on - strandat 5982.797 kb on + strandat 5982.797 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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5,980,377 - AO353_27370 0.54 -2.1
5,980,377 - AO353_27370 0.54 +0.5
5,980,481 + AO353_27370 0.60 -0.6
5,980,481 + AO353_27370 0.60 -0.6
5,980,481 + AO353_27370 0.60 -0.2
5,980,481 + AO353_27370 0.60 +0.0
5,980,481 + AO353_27370 0.60 -0.1
5,980,482 - AO353_27370 0.60 -0.6
5,980,482 - AO353_27370 0.60 -2.1
5,980,482 - AO353_27370 0.60 -1.5
5,980,482 - AO353_27370 0.60 +0.4
5,980,482 - AO353_27370 0.60 +0.2
5,980,482 - AO353_27370 0.60 -0.7
5,980,482 - AO353_27370 0.60 -0.4
5,980,511 + AO353_27370 0.61 -1.1
5,980,511 + AO353_27370 0.61 +0.1
5,980,526 + AO353_27370 0.62 -0.1
5,980,526 + AO353_27370 0.62 -0.3
5,980,526 + AO353_27370 0.62 +1.1
5,980,527 - AO353_27370 0.62 +0.7
5,980,729 - AO353_27370 0.73 -0.3
5,980,864 - AO353_27370 0.80 +0.0
5,980,961 + AO353_27370 0.85 -0.3
5,980,961 + AO353_27370 0.85 +0.2
5,980,961 + AO353_27370 0.85 -1.4
5,980,961 + AO353_27370 0.85 +0.2
5,980,962 - AO353_27370 0.85 -0.8
5,980,962 - AO353_27370 0.85 -0.5
5,980,962 - AO353_27370 0.85 +0.1
5,980,962 - AO353_27370 0.85 +0.4
5,981,168 + -0.7
5,981,210 + +0.5
5,981,361 + AO353_27375 0.15 -0.8
5,981,361 + AO353_27375 0.15 -2.0
5,981,361 + AO353_27375 0.15 -0.8
5,981,362 - AO353_27375 0.15 +0.0
5,981,465 + AO353_27375 0.35 -0.7
5,981,466 - AO353_27375 0.35 -1.8
5,981,470 + AO353_27375 0.36 +1.5
5,981,471 - AO353_27375 0.36 +0.5
5,981,471 - AO353_27375 0.36 +1.2
5,981,471 - AO353_27375 0.36 -0.4
5,981,676 + AO353_27375 0.75 -1.6
5,981,677 - AO353_27375 0.75 -1.1
5,981,810 + -0.2
5,981,810 + +0.8
5,981,811 - -1.2
5,981,811 - -0.7
5,981,811 - +0.2
5,981,811 - -0.1
5,981,811 - +0.5
5,981,939 + -0.2
5,982,229 + AO353_27380 0.86 +0.4
5,982,229 + AO353_27380 0.86 -0.2
5,982,230 - AO353_27380 0.86 -1.1
5,982,289 - +0.0
5,982,357 + +0.5
5,982,370 + +0.9
5,982,371 - +0.1
5,982,378 - -1.2
5,982,410 + -1.6
5,982,411 - -0.3
5,982,427 + +0.6
5,982,427 + -1.7
5,982,427 + +0.6
5,982,427 + -0.5
5,982,427 + -0.8
5,982,428 - -0.2
5,982,509 + -0.2
5,982,509 + +1.6
5,982,509 + -0.7
5,982,510 - +0.2
5,982,646 - -0.3
5,982,797 + +0.6
5,982,797 + +0.8

Or see this region's nucleotide sequence