Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04445 and AO353_04450 are separated by 31 nucleotides AO353_04450 and AO353_04455 overlap by 8 nucleotides
AO353_04445: AO353_04445 - GntR family transcriptional regulator, at 955,245 to 955,976
_04445
AO353_04450: AO353_04450 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 956,008 to 957,114
_04450
AO353_04455: AO353_04455 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) <small>(from data)</small>, at 957,107 to 958,117
_04455
Position (kb) 956
957
958 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 955.025 kb on + strand at 955.026 kb on - strand at 955.026 kb on - strand at 955.066 kb on + strand at 955.067 kb on - strand at 955.067 kb on - strand at 955.090 kb on + strand at 955.091 kb on - strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.296 kb on + strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.632 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.665 kb on - strand, within AO353_04445 at 955.752 kb on + strand, within AO353_04445 at 955.753 kb on - strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445 at 955.890 kb on + strand, within AO353_04445 at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.944 kb on + strand at 955.944 kb on + strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.947 kb on + strand at 955.948 kb on - strand at 955.948 kb on - strand at 955.948 kb on - strand at 956.128 kb on + strand, within AO353_04450 at 956.129 kb on - strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.446 kb on + strand, within AO353_04450 at 956.446 kb on + strand, within AO353_04450 at 956.446 kb on + strand, within AO353_04450 at 956.447 kb on - strand, within AO353_04450 at 956.569 kb on + strand, within AO353_04450 at 956.569 kb on + strand, within AO353_04450 at 956.569 kb on + strand, within AO353_04450 at 956.570 kb on - strand, within AO353_04450 at 956.570 kb on - strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.626 kb on - strand, within AO353_04450 at 956.692 kb on + strand, within AO353_04450 at 956.692 kb on + strand, within AO353_04450 at 956.692 kb on + strand, within AO353_04450 at 956.693 kb on - strand, within AO353_04450 at 956.693 kb on - strand, within AO353_04450 at 956.750 kb on + strand, within AO353_04450 at 956.751 kb on - strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.819 kb on - strand, within AO353_04450 at 956.987 kb on - strand, within AO353_04450 at 956.987 kb on - strand, within AO353_04450 at 956.987 kb on - strand, within AO353_04450 at 957.132 kb on - strand at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.260 kb on + strand, within AO353_04455 at 957.261 kb on - strand, within AO353_04455 at 957.261 kb on - strand at 957.261 kb on - strand, within AO353_04455 at 957.270 kb on - strand, within AO353_04455 at 957.292 kb on + strand, within AO353_04455 at 957.292 kb on + strand, within AO353_04455 at 957.293 kb on - strand, within AO353_04455 at 957.684 kb on + strand, within AO353_04455 at 957.684 kb on + strand, within AO353_04455 at 957.684 kb on + strand, within AO353_04455 at 957.684 kb on + strand, within AO353_04455 at 957.685 kb on - strand, within AO353_04455 at 957.685 kb on - strand, within AO353_04455 at 957.841 kb on + strand, within AO353_04455 at 957.841 kb on + strand, within AO353_04455 at 957.842 kb on - strand, within AO353_04455 at 957.845 kb on + strand, within AO353_04455 at 957.845 kb on + strand, within AO353_04455 at 957.845 kb on + strand, within AO353_04455 at 957.845 kb on + strand, within AO353_04455 at 957.846 kb on - strand, within AO353_04455 at 957.846 kb on - strand, within AO353_04455 at 957.933 kb on + strand, within AO353_04455 at 957.934 kb on - strand, within AO353_04455 at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.031 kb on + strand at 958.032 kb on - strand at 958.032 kb on - strand at 958.032 kb on - strand at 958.032 kb on - strand at 958.032 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 955,025 + +1.4 955,026 - -0.2 955,026 - +1.4 955,066 + +0.3 955,067 - -1.0 955,067 - -0.2 955,090 + +6.7 955,091 - +0.1 955,238 + +2.4 955,238 + +1.6 955,238 + -1.3 955,239 - -1.2 955,239 - +0.1 955,239 - -2.5 955,239 - -3.0 955,239 - -1.8 955,296 + -0.0 955,297 - -2.8 955,297 - -3.2 955,297 - -1.5 955,632 + AO353_04445 0.53 +6.1 955,664 + AO353_04445 0.57 +6.5 955,664 + AO353_04445 0.57 +6.9 955,664 + AO353_04445 0.57 +6.4 955,665 - AO353_04445 0.57 -2.8 955,752 + AO353_04445 0.69 +7.2 955,753 - AO353_04445 0.69 -2.6 955,758 + AO353_04445 0.70 +7.7 955,758 + AO353_04445 0.70 +6.3 955,890 + AO353_04445 0.88 +8.1 955,929 + +5.9 955,929 + +6.6 955,929 + +6.8 955,929 + +7.3 955,929 + +6.4 955,929 + +7.3 955,929 + +7.2 955,929 + +7.1 955,929 + +6.1 955,930 - -2.1 955,930 - -2.1 955,930 - -0.3 955,930 - -1.2 955,930 - -2.2 955,930 - -2.2 955,930 - -1.7 955,930 - -2.1 955,930 - -1.6 955,930 - -3.0 955,930 - -2.6 955,930 - -1.2 955,930 - -1.3 955,930 - -2.8 955,944 + +6.9 955,944 + +7.4 955,945 - -1.7 955,945 - -2.8 955,947 + +6.8 955,948 - -2.0 955,948 - -0.9 955,948 - -2.4 956,128 + AO353_04450 0.11 +2.4 956,129 - AO353_04450 0.11 -2.4 956,374 + AO353_04450 0.33 +4.1 956,374 + AO353_04450 0.33 +1.9 956,374 + AO353_04450 0.33 +4.3 956,374 + AO353_04450 0.33 +3.0 956,374 + AO353_04450 0.33 +3.4 956,374 + AO353_04450 0.33 +1.3 956,374 + AO353_04450 0.33 +3.8 956,374 + AO353_04450 0.33 +3.6 956,374 + AO353_04450 0.33 +2.4 956,375 - AO353_04450 0.33 -1.9 956,375 - AO353_04450 0.33 -2.1 956,375 - AO353_04450 0.33 -0.7 956,375 - AO353_04450 0.33 -2.1 956,375 - AO353_04450 0.33 -1.0 956,375 - AO353_04450 0.33 -2.7 956,375 - AO353_04450 0.33 -4.5 956,446 + AO353_04450 0.40 +1.1 956,446 + AO353_04450 0.40 +5.1 956,446 + AO353_04450 0.40 +2.3 956,447 - AO353_04450 0.40 -3.7 956,569 + AO353_04450 0.51 +2.5 956,569 + AO353_04450 0.51 +4.9 956,569 + AO353_04450 0.51 +2.1 956,570 - AO353_04450 0.51 -2.8 956,570 - AO353_04450 0.51 -3.5 956,623 + AO353_04450 0.56 +5.7 956,623 + AO353_04450 0.56 +5.7 956,623 + AO353_04450 0.56 +5.1 956,623 + AO353_04450 0.56 +4.6 956,623 + AO353_04450 0.56 +5.3 956,623 + AO353_04450 0.56 +5.4 956,623 + AO353_04450 0.56 +5.0 956,623 + AO353_04450 0.56 +5.9 956,623 + AO353_04450 0.56 +5.3 956,623 + AO353_04450 0.56 +5.2 956,623 + AO353_04450 0.56 +4.8 956,623 + AO353_04450 0.56 +5.7 956,623 + AO353_04450 0.56 +4.1 956,623 + AO353_04450 0.56 +5.2 956,624 - AO353_04450 0.56 -2.3 956,624 - AO353_04450 0.56 -2.9 956,624 - AO353_04450 0.56 -2.6 956,624 - AO353_04450 0.56 -1.1 956,624 - AO353_04450 0.56 -2.6 956,624 - AO353_04450 0.56 -2.8 956,624 - AO353_04450 0.56 -3.0 956,624 - AO353_04450 0.56 -2.2 956,624 - AO353_04450 0.56 -2.5 956,624 - AO353_04450 0.56 -1.8 956,626 - AO353_04450 0.56 +0.7 956,692 + AO353_04450 0.62 +5.9 956,692 + AO353_04450 0.62 +5.3 956,692 + AO353_04450 0.62 +5.9 956,693 - AO353_04450 0.62 -2.1 956,693 - AO353_04450 0.62 -2.0 956,750 + AO353_04450 0.67 +4.2 956,751 - AO353_04450 0.67 -1.9 956,770 + AO353_04450 0.69 +5.4 956,770 + AO353_04450 0.69 +5.1 956,770 + AO353_04450 0.69 +5.4 956,770 + AO353_04450 0.69 +4.0 956,771 - AO353_04450 0.69 -1.8 956,771 - AO353_04450 0.69 -2.7 956,771 - AO353_04450 0.69 -3.6 956,771 - AO353_04450 0.69 -3.7 956,818 + AO353_04450 0.73 +4.6 956,818 + AO353_04450 0.73 +4.7 956,818 + AO353_04450 0.73 +4.4 956,818 + AO353_04450 0.73 +5.6 956,818 + AO353_04450 0.73 +3.4 956,818 + AO353_04450 0.73 +6.1 956,818 + AO353_04450 0.73 +4.8 956,819 - AO353_04450 0.73 -0.9 956,987 - AO353_04450 0.88 -2.9 956,987 - AO353_04450 0.88 -0.9 956,987 - AO353_04450 0.88 -2.9 957,132 - -1.2 957,260 + AO353_04455 0.15 -2.4 957,260 + AO353_04455 0.15 -1.2 957,260 + AO353_04455 0.15 -2.0 957,260 + AO353_04455 0.15 -0.7 957,260 + AO353_04455 0.15 -1.9 957,260 + AO353_04455 0.15 -1.5 957,261 - AO353_04455 0.15 -3.0 957,261 - +1.1 957,261 - AO353_04455 0.15 -4.7 957,270 - AO353_04455 0.16 -1.2 957,292 + AO353_04455 0.18 -2.6 957,292 + AO353_04455 0.18 -3.0 957,293 - AO353_04455 0.18 -2.6 957,684 + AO353_04455 0.57 -2.5 957,684 + AO353_04455 0.57 -2.8 957,684 + AO353_04455 0.57 -1.0 957,684 + AO353_04455 0.57 -0.7 957,685 - AO353_04455 0.57 -0.6 957,685 - AO353_04455 0.57 -1.7 957,841 + AO353_04455 0.73 -0.7 957,841 + AO353_04455 0.73 -0.5 957,842 - AO353_04455 0.73 -2.3 957,845 + AO353_04455 0.73 -0.5 957,845 + AO353_04455 0.73 +0.2 957,845 + AO353_04455 0.73 -0.9 957,845 + AO353_04455 0.73 -2.0 957,846 - AO353_04455 0.73 -3.8 957,846 - AO353_04455 0.73 -3.7 957,933 + AO353_04455 0.82 -1.7 957,934 - AO353_04455 0.82 -1.6 958,031 + -1.6 958,031 + -1.7 958,031 + -3.5 958,031 + -3.6 958,031 + -2.7 958,031 + -3.6 958,031 + -3.2 958,031 + -1.7 958,031 + +0.7 958,031 + -3.0 958,031 + -2.6 958,031 + -3.0 958,031 + -3.0 958,032 - -2.4 958,032 - -2.9 958,032 - -3.9 958,032 - -2.2 958,032 - -2.5
Or see this region's nucleotide sequence