Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0699

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0698 and BT0699 are separated by 8 nucleotidesBT0699 and BT0700 are separated by 128 nucleotides BT0698: BT0698 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file), at 869,338 to 870,159 BT0698 BT0699: BT0699 - putative sugar transporter (NCBI ptt file), at 870,168 to 871,325 BT0699 BT0700: BT0700 - GTP pyrophosphokinase (NCBI ptt file), at 871,454 to 873,670 BT0700 Position (kb) 870 871 872Strain fitness (log2 ratio) -3 -2 -1 0 1at 870.243 kb on - strandat 870.363 kb on + strand, within BT0699at 870.378 kb on + strand, within BT0699at 870.387 kb on - strand, within BT0699at 870.395 kb on - strand, within BT0699at 870.611 kb on - strand, within BT0699at 870.715 kb on + strand, within BT0699at 870.804 kb on - strand, within BT0699at 871.000 kb on + strand, within BT0699at 871.052 kb on - strand, within BT0699at 871.364 kb on + strandat 871.446 kb on + strandat 871.627 kb on + strandat 871.628 kb on - strandat 871.678 kb on + strand, within BT0700at 871.679 kb on - strand, within BT0700at 871.830 kb on + strand, within BT0700at 871.830 kb on + strand, within BT0700at 871.831 kb on - strand, within BT0700at 871.858 kb on + strand, within BT0700at 871.939 kb on + strand, within BT0700

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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870,243 - -0.4
870,363 + BT0699 0.17 -1.4
870,378 + BT0699 0.18 -1.0
870,387 - BT0699 0.19 -0.7
870,395 - BT0699 0.20 -1.2
870,611 - BT0699 0.38 -3.5
870,715 + BT0699 0.47 -0.5
870,804 - BT0699 0.55 +0.0
871,000 + BT0699 0.72 -1.0
871,052 - BT0699 0.76 +0.6
871,364 + +0.0
871,446 + -0.2
871,627 + +0.6
871,628 - -1.2
871,678 + BT0700 0.10 -1.4
871,679 - BT0700 0.10 -2.0
871,830 + BT0700 0.17 -2.5
871,830 + BT0700 0.17 -0.4
871,831 - BT0700 0.17 -2.6
871,858 + BT0700 0.18 -2.7
871,939 + BT0700 0.22 -2.0

Or see this region's nucleotide sequence