Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5961

Experiment: LB 10C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5959 and Pf1N1B4_5960 are separated by 7 nucleotidesPf1N1B4_5960 and Pf1N1B4_5961 are separated by 63 nucleotidesPf1N1B4_5961 and Pf1N1B4_5962 overlap by 42 nucleotidesPf1N1B4_5962 and Pf1N1B4_5963 are separated by 233 nucleotides Pf1N1B4_5959 - Probable signal peptide protein, at 408,684 to 408,947 _5959 Pf1N1B4_5960 - Cytochrome b, at 408,955 to 409,482 _5960 Pf1N1B4_5961 - Major facilitator superfamily transporter, at 409,546 to 411,222 _5961 Pf1N1B4_5962 - hypothetical protein, at 411,181 to 411,342 _5962 Pf1N1B4_5963 - Predicted regulator PutR for proline utilization, GntR family, at 411,576 to 412,247 _5963 Position (kb) 409 410 411 412Strain fitness (log2 ratio) -2 -1 0 1 2 3at 408.667 kb on + strandat 408.667 kb on + strandat 408.667 kb on + strandat 408.667 kb on + strandat 408.668 kb on - strandat 408.668 kb on - strandat 408.690 kb on - strandat 408.817 kb on - strand, within Pf1N1B4_5959at 408.855 kb on + strand, within Pf1N1B4_5959at 408.865 kb on - strand, within Pf1N1B4_5959at 408.865 kb on - strand, within Pf1N1B4_5959at 408.865 kb on - strand, within Pf1N1B4_5959at 408.900 kb on + strand, within Pf1N1B4_5959at 408.900 kb on + strand, within Pf1N1B4_5959at 408.900 kb on + strand, within Pf1N1B4_5959at 408.901 kb on - strandat 408.901 kb on - strand, within Pf1N1B4_5959at 408.945 kb on + strandat 408.992 kb on + strandat 408.992 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 408.996 kb on + strandat 409.084 kb on + strand, within Pf1N1B4_5960at 409.085 kb on - strand, within Pf1N1B4_5960at 409.091 kb on + strand, within Pf1N1B4_5960at 409.092 kb on - strand, within Pf1N1B4_5960at 409.321 kb on + strand, within Pf1N1B4_5960at 409.321 kb on + strand, within Pf1N1B4_5960at 409.322 kb on - strand, within Pf1N1B4_5960at 409.322 kb on - strand, within Pf1N1B4_5960at 409.547 kb on + strandat 409.547 kb on + strandat 409.547 kb on + strandat 409.547 kb on + strandat 409.547 kb on + strandat 409.547 kb on + strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.548 kb on - strandat 409.646 kb on + strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.647 kb on - strandat 409.797 kb on - strand, within Pf1N1B4_5961at 409.797 kb on - strand, within Pf1N1B4_5961at 409.811 kb on + strand, within Pf1N1B4_5961at 409.811 kb on + strand, within Pf1N1B4_5961at 409.811 kb on + strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 409.812 kb on - strand, within Pf1N1B4_5961at 410.043 kb on - strand, within Pf1N1B4_5961at 410.043 kb on - strand, within Pf1N1B4_5961at 410.043 kb on - strand, within Pf1N1B4_5961at 410.043 kb on - strand, within Pf1N1B4_5961at 410.043 kb on - strand, within Pf1N1B4_5961at 410.201 kb on + strand, within Pf1N1B4_5961at 410.232 kb on - strand, within Pf1N1B4_5961at 410.248 kb on + strand, within Pf1N1B4_5961at 410.249 kb on - strand, within Pf1N1B4_5961at 410.405 kb on + strand, within Pf1N1B4_5961at 410.420 kb on + strand, within Pf1N1B4_5961at 410.470 kb on + strand, within Pf1N1B4_5961at 410.582 kb on + strandat 410.777 kb on + strand, within Pf1N1B4_5961at 410.777 kb on + strand, within Pf1N1B4_5961at 410.778 kb on - strandat 410.778 kb on - strand, within Pf1N1B4_5961at 410.778 kb on - strand, within Pf1N1B4_5961at 410.778 kb on - strand, within Pf1N1B4_5961at 410.778 kb on - strand, within Pf1N1B4_5961at 410.937 kb on + strand, within Pf1N1B4_5961at 410.937 kb on + strand, within Pf1N1B4_5961at 410.937 kb on + strand, within Pf1N1B4_5961at 410.938 kb on - strandat 410.938 kb on - strand, within Pf1N1B4_5961at 410.938 kb on - strandat 410.938 kb on - strand, within Pf1N1B4_5961at 410.938 kb on - strand, within Pf1N1B4_5961at 410.938 kb on - strand, within Pf1N1B4_5961at 410.996 kb on - strand, within Pf1N1B4_5961at 410.996 kb on - strand, within Pf1N1B4_5961at 411.205 kb on - strandat 411.248 kb on - strand, within Pf1N1B4_5962at 411.250 kb on - strand, within Pf1N1B4_5962at 411.250 kb on - strand, within Pf1N1B4_5962at 411.250 kb on - strand, within Pf1N1B4_5962at 411.250 kb on - strand, within Pf1N1B4_5962at 411.268 kb on - strand, within Pf1N1B4_5962at 411.394 kb on + strandat 411.435 kb on - strandat 411.490 kb on - strandat 411.490 kb on - strandat 411.614 kb on + strandat 411.614 kb on + strandat 411.877 kb on + strand, within Pf1N1B4_5963at 411.878 kb on - strand, within Pf1N1B4_5963at 412.062 kb on - strand, within Pf1N1B4_5963

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 10C
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408,667 + +0.9
408,667 + -0.3
408,667 + +0.6
408,667 + +0.8
408,668 - -0.0
408,668 - +0.3
408,690 - +0.1
408,817 - Pf1N1B4_5959 0.50 +0.9
408,855 + Pf1N1B4_5959 0.65 +0.8
408,865 - Pf1N1B4_5959 0.69 +0.2
408,865 - Pf1N1B4_5959 0.69 +0.5
408,865 - Pf1N1B4_5959 0.69 -0.0
408,900 + Pf1N1B4_5959 0.82 +0.2
408,900 + Pf1N1B4_5959 0.82 -0.0
408,900 + Pf1N1B4_5959 0.82 -0.2
408,901 - +1.2
408,901 - Pf1N1B4_5959 0.82 +1.0
408,945 + +1.9
408,992 + -0.1
408,992 + -0.0
408,996 + +1.7
408,996 + +2.1
408,996 + +0.4
408,996 + +0.5
408,996 + -0.2
408,996 + -0.4
408,996 + -0.2
409,084 + Pf1N1B4_5960 0.24 -0.2
409,085 - Pf1N1B4_5960 0.25 -0.5
409,091 + Pf1N1B4_5960 0.26 -0.8
409,092 - Pf1N1B4_5960 0.26 -0.6
409,321 + Pf1N1B4_5960 0.69 -1.2
409,321 + Pf1N1B4_5960 0.69 -0.1
409,322 - Pf1N1B4_5960 0.70 -1.3
409,322 - Pf1N1B4_5960 0.70 -0.5
409,547 + -0.3
409,547 + +0.6
409,547 + +0.1
409,547 + +0.8
409,547 + -0.3
409,547 + -0.2
409,548 - -0.8
409,548 - +0.6
409,548 - +1.2
409,548 - +0.4
409,548 - -0.1
409,548 - -0.2
409,548 - +1.1
409,548 - -0.0
409,548 - -0.6
409,548 - -0.6
409,646 + +0.7
409,647 - -0.8
409,647 - -0.3
409,647 - +0.2
409,647 - +0.7
409,647 - -1.3
409,647 - -0.8
409,797 - Pf1N1B4_5961 0.15 -1.9
409,797 - Pf1N1B4_5961 0.15 -0.1
409,811 + Pf1N1B4_5961 0.16 -0.3
409,811 + Pf1N1B4_5961 0.16 -0.5
409,811 + Pf1N1B4_5961 0.16 -0.4
409,812 - Pf1N1B4_5961 0.16 +0.7
409,812 - Pf1N1B4_5961 0.16 +0.8
409,812 - Pf1N1B4_5961 0.16 -1.1
409,812 - Pf1N1B4_5961 0.16 -1.1
409,812 - Pf1N1B4_5961 0.16 +0.3
409,812 - Pf1N1B4_5961 0.16 +1.4
409,812 - Pf1N1B4_5961 0.16 +0.5
410,043 - Pf1N1B4_5961 0.30 -0.6
410,043 - Pf1N1B4_5961 0.30 +0.0
410,043 - Pf1N1B4_5961 0.30 +0.0
410,043 - Pf1N1B4_5961 0.30 +0.0
410,043 - Pf1N1B4_5961 0.30 +0.6
410,201 + Pf1N1B4_5961 0.39 -0.2
410,232 - Pf1N1B4_5961 0.41 -0.8
410,248 + Pf1N1B4_5961 0.42 +0.2
410,249 - Pf1N1B4_5961 0.42 +0.7
410,405 + Pf1N1B4_5961 0.51 -0.5
410,420 + Pf1N1B4_5961 0.52 -0.4
410,470 + Pf1N1B4_5961 0.55 +0.7
410,582 + +0.3
410,777 + Pf1N1B4_5961 0.73 +0.9
410,777 + Pf1N1B4_5961 0.73 -1.6
410,778 - -0.1
410,778 - Pf1N1B4_5961 0.73 -0.8
410,778 - Pf1N1B4_5961 0.73 +0.0
410,778 - Pf1N1B4_5961 0.73 +0.6
410,778 - Pf1N1B4_5961 0.73 -1.4
410,937 + Pf1N1B4_5961 0.83 +0.2
410,937 + Pf1N1B4_5961 0.83 +1.0
410,937 + Pf1N1B4_5961 0.83 +0.1
410,938 - +3.0
410,938 - Pf1N1B4_5961 0.83 -0.8
410,938 - -0.5
410,938 - Pf1N1B4_5961 0.83 +0.4
410,938 - Pf1N1B4_5961 0.83 -1.6
410,938 - Pf1N1B4_5961 0.83 -1.6
410,996 - Pf1N1B4_5961 0.86 +0.8
410,996 - Pf1N1B4_5961 0.86 -0.9
411,205 - -0.2
411,248 - Pf1N1B4_5962 0.41 +0.1
411,250 - Pf1N1B4_5962 0.43 -0.2
411,250 - Pf1N1B4_5962 0.43 -0.4
411,250 - Pf1N1B4_5962 0.43 -0.1
411,250 - Pf1N1B4_5962 0.43 +0.9
411,268 - Pf1N1B4_5962 0.54 -1.0
411,394 + +0.3
411,435 - +0.1
411,490 - -0.0
411,490 - -0.4
411,614 + +0.8
411,614 + -0.4
411,877 + Pf1N1B4_5963 0.45 -1.5
411,878 - Pf1N1B4_5963 0.45 -0.0
412,062 - Pf1N1B4_5963 0.72 +0.1

Or see this region's nucleotide sequence